PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_4	13	CH_aly_588	3	5	0.000685155
Arabidopsis thaliana	2	13	CH_ath_421	3	4	0.000165034
Capsella rubella	scaffold_4	13	CH_cru_259	4	6	0.00000182457
Cucumis melo	CM3.5_scaffold00016	13	CH_cme_245	3	3	0.0000575261
Eucalyptus grandis	scaffold_8	13	CH_egr_725	4	6	0.00000059187
Malus domestica	13	13	CH_mdo_289	3	3	0.0000366898
Medicago truncatula	chr3	13	CH_mtr_1227	3	6	0.000916101
Medicago truncatula	chr5	13	CH_mtr_311	5	7	0.000000000697549
Medicago truncatula	chr7	13	CH_mtr_973	3	4	0.000183462
Oryza sativa ssp. japonica	3	13	CH_osa_509	3	3	0.0000252936
Populus trichocarpa	Chr01	13	CH_ptr_570	6	80	0.000095067
Prunus persica	scaffold_1	13	CH_ppe_497	3	3	0.0000657558
Solanum lycopersicum	ch09	13	CH_sly_154	5	5	0.000000000154996
Solanum tuberosum	chr09	13	CH_stu_128	7	7	7.09227e-16
Thellungiella parvula	ch4-6	13	CH_tpa_223	3	3	0.0000865773
Theobroma cacao	scaffold_4	13	CH_tca_437	3	3	0.0000497741
Zea mays	1	13	CH_zma_338	3	3	0.0000656206

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V