PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_4	2	CH_aly_35	4	4	0.00000000000377564
Arabidopsis lyrata	scaffold_4	3	CH_aly_47	4	4	0.00000000000377564
Arabidopsis thaliana	2	1	CH_ath_51	4	7	0.000000000110694
Arabidopsis thaliana	2	2	CH_ath_32	5	7	0.000000000000011861
Arabidopsis thaliana	2	3	CH_ath_40	5	7	0.000000000000011861
Beta vulgaris	Bvchr1_un.sca002	1	CH_bvu_234	2	2	0.000965624
Brassica rapa	A04	2	CH_bra_304	2	3	0.000893138
Capsella rubella	scaffold_4	2	CH_cru_58	4	5	0.0000000000333479
Capsella rubella	scaffold_4	3	CH_cru_63	4	5	0.0000000000333479
Eucalyptus grandis	scaffold_9	2	CH_egr_18	10	13	1.6098e-32
Eucalyptus grandis	scaffold_9	3	CH_egr_24	10	13	1.6098e-32
Eucalyptus grandis	scaffold_9	5	CH_egr_22	10	13	1.6098e-32
Eucalyptus grandis	scaffold_9	6	CH_egr_30	10	13	1.6098e-32
Fragaria vesca	LG5	2	CH_fve_344	2	6	0.000898069
Glycine max	Gm02	2	CH_gma_16	6	7	3.0585e-19
Glycine max	Gm02	3	CH_gma_22	6	7	3.0585e-19
Lotus japonicus	chr4	2	CH_lja_119	2	3	0.000201674
Lotus japonicus	chr4	3	CH_lja_150	2	3	0.000201674
Populus trichocarpa	Chr07	2	CH_ptr_406	2	5	0.000497983
Solanum lycopersicum	ch01	1	CH_sly_57	6	15	0.0000000000000323099
Solanum lycopersicum	ch01	2	CH_sly_65	6	15	0.000000000000119955
Solanum lycopersicum	ch01	3	CH_sly_82	6	15	0.000000000000119955
Thellungiella parvula	ch4-2	2	CH_tpa_163	2	2	0.000238407

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V