PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0043168
Description: anion binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	2	CH_ath_242	21	48	0.0000280718
Arabidopsis thaliana	1	3	CH_ath_179	26	58	0.000000904407
Arabidopsis thaliana	1	5	CH_ath_79	21	48	0.0000280718
Arabidopsis thaliana	1	6	CH_ath_118	66	298	0.000134733
Arabidopsis thaliana	1	6	CH_ath_60	26	58	0.000000904407
Brassica rapa	A09	3	CH_bra_136	26	55	0.00000484378
Brassica rapa	A09	6	CH_bra_28	26	55	0.00000484378
Eucalyptus grandis	scaffold_6	1	CH_egr_598	9	9	0.00049632
Eucalyptus grandis	scaffold_6	2	CH_egr_768	9	9	0.000623181
Eucalyptus grandis	scaffold_6	3	CH_egr_350	20	22	0.000000000987051
Eucalyptus grandis	scaffold_6	4	CH_egr_246	11	13	0.000538076
Eucalyptus grandis	scaffold_6	5	CH_egr_286	11	13	0.000705596
Eucalyptus grandis	scaffold_6	6	CH_egr_174	20	22	0.000000000987051
Glycine max	Gm18	5	CH_gma_86	55	212	0.000343328
Glycine max	Gm03	6	CH_gma_89	10	10	0.000089755
Gossypium raimondii	Chr10	3	CH_gra_268	30	74	0.000079998
Gossypium raimondii	Chr11	4	CH_gra_62	10	10	0.0000107532
Gossypium raimondii	Chr10	6	CH_gra_83	31	78	0.0000774917
Gossypium raimondii	Chr09	7	CH_gra_5	16	35	0.000171726
Gossypium raimondii	Chr09	8	CH_gra_7	16	35	0.00028212
Gossypium raimondii	Chr09	10	CH_gra_4	16	35	0.000171726
Gossypium raimondii	Chr09	11	CH_gra_4	16	35	0.00028212
Oryza sativa ssp. japonica	3	10	CH_osa_56	31	223	0.0004069
Populus trichocarpa	Chr01	2	CH_ptr_217	30	70	0.00000178884
Solanum lycopersicum	ch11	6	CH_sly_113	60	214	0.0000116529
Solanum tuberosum	chr08	3	CH_stu_418	12	12	0.00000252947
Solanum tuberosum	chr11	3	CH_stu_713	22	43	0.000429617
Solanum tuberosum	chr08	6	CH_stu_152	12	12	0.00000252947
Solanum tuberosum	chr11	6	CH_stu_218	22	43	0.000429617
Thellungiella parvula	ch2-4	4	CH_tpa_15	55	248	0.000119163
Thellungiella parvula	ch2-4	5	CH_tpa_26	33	106	0.0000636055
Theobroma cacao	scaffold_5	6	CH_tca_119	10	12	0.000509003
Vitis vinifera	chr18	3	CH_vvi_153	30	54	0.0000000263035
Vitis vinifera	chr18	6	CH_vvi_53	55	117	0.000000000000253119

Available child term results

GO term	Description	Number of clusters
GO:0000062	fatty-acyl-CoA binding	1
GO:0005524	ATP binding	54
GO:0005525	GTP binding	29
GO:0005542	folic acid binding	38
GO:0005543	phospholipid binding	12
GO:0005544	calcium-dependent phospholipid binding	87
GO:0005545	1-phosphatidylinositol binding	1
GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	4
GO:0008201	heparin binding	3
GO:0008429	phosphatidylethanolamine binding	7
GO:0009374	biotin binding	2
GO:0010013	N-1-naphthylphthalamic acid binding	4
GO:0010181	FMN binding	71
GO:0010427	abscisic acid binding	1
GO:0016208	AMP binding	3
GO:0030170	pyridoxal phosphate binding	35
GO:0030553	cGMP binding	3
GO:0030976	thiamine pyrophosphate binding	15
GO:0031177	phosphopantetheine binding	3
GO:0031418	L-ascorbic acid binding	11
GO:0032266	phosphatidylinositol-3-phosphate binding	3
GO:0035091	phosphatidylinositol binding	4
GO:0035639	purine ribonucleoside triphosphate binding	18
GO:0043295	glutathione binding	9
GO:0043531	ADP binding	1129
GO:0050660	flavin adenine dinucleotide binding	43
GO:0070401	NADP+ binding	25
GO:0070403	NAD+ binding	6
GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	1
GO:2001227	quercitrin binding	1

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V