PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0030170
Description: pyridoxal phosphate binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00071	1	CH_atr_109	4	4	0.00000378501
Amborella trichopoda	scaffold00071	2	CH_atr_112	4	4	0.00000378501
Amborella trichopoda	scaffold00071	3	CH_atr_35	9	13	0.0000000000000041868
Carica papaya	supercontig_117	1	CH_cpa_33	5	5	0.0000000346352
Carica papaya	supercontig_123	1	CH_cpa_66	4	4	0.00000801591
Carica papaya	supercontig_117	2	CH_cpa_37	5	5	0.0000000346352
Carica papaya	supercontig_123	2	CH_cpa_77	4	4	0.00000801591
Carica papaya	supercontig_123	3	CH_cpa_137	4	4	0.0000116669
Citrus sinensis	scaffold00144	1	CH_csi_8	9	9	9.458e-18
Citrus sinensis	scaffold00144	2	CH_csi_6	9	9	9.458e-18
Eucalyptus grandis	scaffold_8	1	CH_egr_261	5	5	0.00000000974392
Eucalyptus grandis	scaffold_8	2	CH_egr_345	5	5	0.00000000974392
Eucalyptus grandis	scaffold_8	3	CH_egr_410	5	5	0.0000000152942
Eucalyptus grandis	scaffold_6	6	CH_egr_296	10	226	0.000229364
Fragaria vesca	LG2	1	CH_fve_124	4	4	0.00000332409
Fragaria vesca	LG2	2	CH_fve_137	4	4	0.00000332409
Fragaria vesca	LG2	3	CH_fve_208	4	4	0.00000709144
Lotus japonicus	chr4	3	CH_lja_87	4	5	0.0000083576
Medicago truncatula	chr3	1	CH_mtr_553	3	3	0.000645624
Medicago truncatula	chr3	2	CH_mtr_670	3	3	0.000659559
Oryza sativa ssp. japonica	10	1	CH_osa_226	5	18	0.0000163503
Oryza sativa ssp. japonica	10	2	CH_osa_222	5	18	0.0000170769
Prunus persica	scaffold_6	1	CH_ppe_122	5	5	0.0000000419866
Solanum lycopersicum	ch07	1	CH_sly_154	6	11	0.0000000907829
Solanum lycopersicum	ch07	2	CH_sly_158	6	11	0.0000000907829
Solanum lycopersicum	ch07	3	CH_sly_217	6	11	0.000000162031
Solanum lycopersicum	ch08	4	CH_sly_60	14	263	0.000000340579
Solanum tuberosum	chr05	1	CH_stu_251	5	6	0.000000701011
Solanum tuberosum	chr05	2	CH_stu_268	5	6	0.000000701011
Solanum tuberosum	chr05	3	CH_stu_279	6	7	0.00000000952252
Solanum tuberosum	chr08	4	CH_stu_93	11	85	0.0000000252663
Theobroma cacao	scaffold_2	1	CH_tca_265	4	8	0.00036589
Vitis vinifera	chr18	4	CH_vvi_76	10	117	0.0000083297
Vitis vinifera	chr18	5	CH_vvi_74	10	117	0.0000083297
Vitis vinifera	chr18	6	CH_vvi_107	10	117	0.0000227957

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V