PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0017111
Description: nucleoside-triphosphatase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00078	3	CH_atr_263	9	22	0.000139638
Capsella rubella	scaffold_5	1	CH_cru_77	13	30	0.0000000595898
Capsella rubella	scaffold_5	3	CH_cru_106	14	30	0.0000000082185
Capsella rubella	scaffold_5	4	CH_cru_23	13	30	0.0000000595898
Capsella rubella	scaffold_5	6	CH_cru_39	14	30	0.0000000082185
Citrullus lanatus	Chr1	1	CH_cla_119	6	7	0.0000540102
Citrullus lanatus	Chr1	2	CH_cla_137	6	7	0.0000690533
Citrullus lanatus	Chr1	3	CH_cla_227	6	7	0.000159372
Citrullus lanatus	Chr11	3	CH_cla_133	8	11	0.00000350455
Citrus sinensis	scaffold00085	3	CH_csi_46	9	9	0.00000000166506
Citrus sinensis	scaffold00287	3	CH_csi_133	6	6	0.0000368259
Cucumis melo	CM3.5_scaffold00007	3	CH_cme_185	6	6	0.0000241643
Eucalyptus grandis	scaffold_10	1	CH_egr_603	5	5	0.000537457
Eucalyptus grandis	scaffold_10	1	CH_egr_309	10	17	0.000000134132
Eucalyptus grandis	scaffold_3	1	CH_egr_401	8	12	0.00000494718
Eucalyptus grandis	scaffold_9	1	CH_egr_84	16	20	1.45221e-17
Eucalyptus grandis	scaffold_3	2	CH_egr_516	8	12	0.00000634133
Eucalyptus grandis	scaffold_10	3	CH_egr_185	14	17	0.0000000000000202685
Eucalyptus grandis	scaffold_3	3	CH_egr_331	11	14	0.000000000352414
Eucalyptus grandis	scaffold_6	3	CH_egr_525	7	7	0.00000107959
Eucalyptus grandis	scaffold_7	3	CH_egr_271	16	34	0.0000000000410644
Eucalyptus grandis	scaffold_10	4	CH_egr_160	10	17	0.000000134132
Eucalyptus grandis	scaffold_9	4	CH_egr_72	16	20	1.45221e-17
Eucalyptus grandis	scaffold_10	6	CH_egr_120	14	17	0.0000000000000202685
Eucalyptus grandis	scaffold_3	6	CH_egr_168	11	14	0.000000000352414
Eucalyptus grandis	scaffold_7	6	CH_egr_151	16	34	0.0000000000410644
Fragaria vesca	LG1	3	CH_fve_42	13	18	0.00000000000156437
Fragaria vesca	LG4	3	CH_fve_123	13	32	0.0000000440367
Fragaria vesca	LG1	6	CH_fve_21	13	18	0.00000000000156437
Fragaria vesca	LG4	6	CH_fve_38	13	32	0.0000000440367
Medicago truncatula	chr2	3	CH_mtr_853	5	5	0.000816674
Medicago truncatula	chr2	3	CH_mtr_659	10	29	0.000127947
Medicago truncatula	chr5	3	CH_mtr_852	5	5	0.000816674
Medicago truncatula	chr6	4	CH_mtr_104	19	114	0.000000108177
Medicago truncatula	chr2	6	CH_mtr_213	10	29	0.000127947
Prunus persica	scaffold_7	1	CH_ppe_128	9	12	0.0000000579518
Prunus persica	scaffold_7	2	CH_ppe_146	9	12	0.0000000727641
Prunus persica	scaffold_7	3	CH_ppe_126	10	12	0.00000000118349
Prunus persica	scaffold_7	6	CH_ppe_65	10	12	0.00000000118349
Ricinus communis	29634	1	CH_rco_137	6	7	0.0000715871
Ricinus communis	29634	2	CH_rco_152	6	7	0.0000851619
Ricinus communis	29634	3	CH_rco_225	6	7	0.000156999
Ricinus communis	30190	3	CH_rco_224	6	7	0.000156999
Solanum lycopersicum	ch06	3	CH_sly_211	19	69	0.000000119592
Solanum lycopersicum	ch10	4	CH_sly_77	10	23	0.0000136512
Solanum lycopersicum	ch10	5	CH_sly_82	10	23	0.0000164451
Solanum lycopersicum	ch06	6	CH_sly_83	19	69	0.000000119592
Solanum tuberosum	chr03	3	CH_stu_107	14	15	0.00000000000000326932
Solanum tuberosum	chr12	3	CH_stu_582	7	9	0.0000968115
Solanum tuberosum	chr03	6	CH_stu_73	14	15	0.00000000000000326932
Solanum tuberosum	chr08	6	CH_stu_220	11	33	0.000449056
Solanum tuberosum	chr12	9	CH_stu_26	5	5	0.000497752
Theobroma cacao	scaffold_1	3	CH_tca_226	7	8	0.00000310512
Zea mays	5	3	CH_zma_318	5	5	0.000746583

Available child term results

GO term	Description	Number of clusters
GO:0003678	DNA helicase activity	4
GO:0003689	DNA clamp loader activity	5
GO:0003724	RNA helicase activity	8
GO:0003777	microtubule motor activity	7
GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	6
GO:0003924	GTPase activity	35
GO:0004003	ATP-dependent DNA helicase activity	4
GO:0004004	ATP-dependent RNA helicase activity	2
GO:0004008	copper-exporting ATPase activity	1
GO:0004012	phospholipid-translocating ATPase activity	20
GO:0004176	ATP-dependent peptidase activity	8
GO:0004386	helicase activity	33
GO:0005388	calcium-transporting ATPase activity	31
GO:0008026	ATP-dependent helicase activity	20
GO:0008094	DNA-dependent ATPase activity	3
GO:0008551	cadmium-exporting ATPase activity	3
GO:0008553	hydrogen-exporting ATPase activity, phosphorylative mechanism	10
GO:0008559	xenobiotic-transporting ATPase activity	6
GO:0008574	plus-end-directed microtubule motor activity	4
GO:0009378	four-way junction helicase activity	10
GO:0015415	phosphate ion transmembrane-transporting ATPase activity	5
GO:0015446	arsenite-transmembrane transporting ATPase activity	16
GO:0015662	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6
GO:0016887	ATPase activity	102
GO:0019829	cation-transporting ATPase activity	17
GO:0042623	ATPase activity, coupled	10
GO:0042626	ATPase activity, coupled to transmembrane movement of substances	94
GO:0043138	3'-5' DNA helicase activity	4
GO:0043139	5'-3' DNA helicase activity	4
GO:0043141	ATP-dependent 5'-3' DNA helicase activity	14
GO:0043142	single-stranded DNA-dependent ATPase activity	7
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	1
GO:0046961	proton-transporting ATPase activity, rotational mechanism	3

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V