PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016614
Description: oxidoreductase activity, acting on CH-OH group of donors

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_8	2	CH_aly_346	4	6	0.000952063
Eucalyptus grandis	scaffold_7	3	CH_egr_578	5	6	0.00000468307
Fragaria vesca	LG6	3	CH_fve_282	4	4	0.000074451
Glycine max	Gm18	3	CH_gma_277	5	5	0.00000523119
Gossypium raimondii	Chr12	1	CH_gra_179	5	7	0.0000500149
Gossypium raimondii	Chr12	2	CH_gra_225	5	7	0.0000889442
Gossypium raimondii	Chr12	3	CH_gra_157	6	7	0.000000355861
Populus trichocarpa	Chr02	4	CH_ptr_89	12	96	0.00000803159
Populus trichocarpa	Chr02	5	CH_ptr_91	12	96	0.0000180119
Prunus persica	scaffold_3	3	CH_ppe_247	5	5	0.00000196708
Solanum lycopersicum	ch08	1	CH_sly_310	4	4	0.000132101
Solanum lycopersicum	ch08	2	CH_sly_370	4	4	0.000175191
Thellungiella parvula	ch1-1	1	CH_tpa_109	4	5	0.000182503
Thellungiella parvula	ch6-6	2	CH_tpa_177	4	5	0.000402094
Thellungiella parvula	ch6-6	3	CH_tpa_213	4	5	0.000455403
Thellungiella parvula	ch7-4	6	CH_tpa_22	11	103	0.0000136398
Vitis vinifera	chr16	1	CH_vvi_155	5	6	0.000000848125
Vitis vinifera	chr14	3	CH_vvi_187	6	8	0.000000245229

Available child term results

GO term	Description	Number of clusters
GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	27
GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	3
GO:0003862	3-isopropylmalate dehydrogenase activity	18
GO:0003885	D-arabinono-1,4-lactone oxidase activity	13
GO:0003938	IMP dehydrogenase activity	9
GO:0003939	L-iditol 2-dehydrogenase activity	10
GO:0003979	UDP-glucose 6-dehydrogenase activity	10
GO:0004022	alcohol dehydrogenase (NAD) activity	12
GO:0004033	aldo-keto reductase (NADP) activity	3
GO:0004345	glucose-6-phosphate dehydrogenase activity	9
GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	3
GO:0004368	glycerol-3-phosphate dehydrogenase activity	1
GO:0004412	homoserine dehydrogenase activity	2
GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	18
GO:0004449	isocitrate dehydrogenase (NAD+) activity	7
GO:0004450	isocitrate dehydrogenase (NADP+) activity	4
GO:0004455	ketol-acid reductoisomerase activity	10
GO:0004459	L-lactate dehydrogenase activity	6
GO:0004470	malic enzyme activity	6
GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	1
GO:0004617	phosphoglycerate dehydrogenase activity	10
GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	16
GO:0008106	alcohol dehydrogenase (NADP+) activity	2
GO:0008442	3-hydroxyisobutyrate dehydrogenase activity	9
GO:0008677	2-dehydropantoate 2-reductase activity	6
GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	5
GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	206
GO:0008891	glycolate oxidase activity	6
GO:0010301	xanthoxin dehydrogenase activity	4
GO:0016615	malate dehydrogenase activity	2
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	26
GO:0016618	hydroxypyruvate reductase activity	12
GO:0016901	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	10
GO:0018454	acetoacetyl-CoA reductase activity	14
GO:0030060	L-malate dehydrogenase activity	5
GO:0030604	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	6
GO:0045551	cinnamyl-alcohol dehydrogenase activity	7
GO:0045552	dihydrokaempferol 4-reductase activity	8
GO:0046029	mannitol dehydrogenase activity	36
GO:0046577	long-chain-alcohol oxidase activity	4
GO:0047012	sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	2
GO:0047501	(+)-neomenthol dehydrogenase activity	10
GO:0047560	3-dehydrosphinganine reductase activity	6
GO:0050105	L-gulonolactone oxidase activity	22
GO:0050235	pyridoxal 4-dehydrogenase activity	3
GO:0050577	GDP-L-fucose synthase activity	2
GO:0051990	(R)-2-hydroxyglutarate dehydrogenase activity	4
GO:0052747	sinapyl alcohol dehydrogenase activity	3
GO:0052852	very-long-chain-(S)-2-hydroxy-acid oxidase activity	3
GO:0070524	11-beta-hydroxysteroid dehydrogenase (NADP+) activity	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V