PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00077	3	CH_atr_222	3	3	0.0000464769
Brassica rapa	A09	2	CH_bra_220	4	9	0.000172218
Brassica rapa	A09	3	CH_bra_264	4	9	0.000227111
Citrus sinensis	scaffold00054	2	CH_csi_178	3	3	0.000394365
Citrus sinensis	scaffold00164	2	CH_csi_30	7	16	0.000000000212997
Citrus sinensis	scaffold00266	2	CH_csi_179	3	3	0.000394365
Citrus sinensis	scaffold00054	3	CH_csi_221	3	3	0.000444666
Citrus sinensis	scaffold00164	3	CH_csi_40	7	16	0.000000000285026
Citrus sinensis	scaffold00266	3	CH_csi_222	3	3	0.000444666
Eucalyptus grandis	scaffold_6	2	CH_egr_350	9	74	0.0000000144754
Glycine max	Gm05	3	CH_gma_395	3	3	0.000168719
Gossypium raimondii	Chr02	2	CH_gra_57	7	11	0.00000000000525558
Gossypium raimondii	Chr10	2	CH_gra_39	11	55	0.0000000000000243158
Gossypium raimondii	Chr10	3	CH_gra_68	11	55	0.000000000000190474
Gossypium raimondii	Chr10	5	CH_gra_23	13	91	0.00000000000000302069
Medicago truncatula	chr8	3	CH_mtr_198	5	6	0.000000000329025
Solanum tuberosum	chr04	3	CH_stu_704	3	4	0.000380781
Solanum tuberosum	chr04	9	CH_stu_19	3	4	0.000147604

GO term	Description	Number of clusters
GO:0034052	positive regulation of plant-type hypersensitive response	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V