PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0008610
Description: lipid biosynthetic process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00067	1	CH_atr_96	6	12	0.000000890316
Beta vulgaris	Bvchr3.sca001	3	CH_bvu_218	5	6	0.0000952103
Citrus sinensis	scaffold00129	1	CH_csi_98	5	9	0.0000493826
Citrus sinensis	scaffold00129	3	CH_csi_134	6	10	0.0000415354
Eucalyptus grandis	scaffold_8	3	CH_egr_542	6	7	0.00000165911
Glycine max	Gm12	1	CH_gma_337	4	4	0.000528507
Malus domestica	1	1	CH_mdo_66	5	6	0.000000367586
Manihot esculenta	scaffold10563	1	CH_mes_32	6	6	0.00000000443255
Manihot esculenta	scaffold10563	2	CH_mes_58	6	6	0.000000270906
Manihot esculenta	scaffold10563	3	CH_mes_31	8	8	0.000000000102731
Medicago truncatula	chr6	1	CH_mtr_569	4	9	0.000816558
Solanum tuberosum	chr04	3	CH_stu_358	6	6	0.000000297402
Theobroma cacao	scaffold_1	1	CH_tca_160	6	9	0.00000191703
Theobroma cacao	scaffold_4	1	CH_tca_136	6	8	0.000000644283
Theobroma cacao	scaffold_4	2	CH_tca_209	6	8	0.0000160036
Theobroma cacao	scaffold_4	3	CH_tca_267	6	8	0.0000185265
Vitis vinifera	chr15	4	CH_vvi_71	10	72	0.00000324991
Vitis vinifera	chr15	5	CH_vvi_71	10	40	0.0000072414

Available child term results

GO term	Description	Number of clusters
GO:0006633	fatty acid biosynthetic process	40
GO:0006636	unsaturated fatty acid biosynthetic process	3
GO:0006651	diacylglycerol biosynthetic process	6
GO:0006656	phosphatidylcholine biosynthetic process	4
GO:0006694	steroid biosynthetic process	6
GO:0008299	isoprenoid biosynthetic process	11
GO:0009244	lipopolysaccharide core region biosynthetic process	3
GO:0009247	glycolipid biosynthetic process	1
GO:0010263	tricyclic triterpenoid biosynthetic process	5
GO:0010322	regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2
GO:0010371	regulation of gibberellin biosynthetic process	2
GO:0010373	negative regulation of gibberellin biosynthetic process	2
GO:0010422	regulation of brassinosteroid biosynthetic process	2
GO:0010423	negative regulation of brassinosteroid biosynthetic process	1
GO:0010686	tetracyclic triterpenoid biosynthetic process	12
GO:0010867	positive regulation of triglyceride biosynthetic process	5
GO:0016099	monoterpenoid biosynthetic process	2
GO:0016114	terpenoid biosynthetic process	2
GO:0016117	carotenoid biosynthetic process	3
GO:0016255	attachment of GPI anchor to protein	38
GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9
GO:0019370	leukotriene biosynthetic process	7
GO:0019375	galactolipid biosynthetic process	2
GO:0019408	dolichol biosynthetic process	10
GO:0019432	triglyceride biosynthetic process	2
GO:0019745	pentacyclic triterpenoid biosynthetic process	8
GO:0030497	fatty acid elongation	4
GO:0031408	oxylipin biosynthetic process	12
GO:0036092	phosphatidylinositol-3-phosphate biosynthetic process	6
GO:0043693	monoterpene biosynthetic process	2
GO:0045337	farnesyl diphosphate biosynthetic process	6
GO:0046246	terpene biosynthetic process	4
GO:0051762	sesquiterpene biosynthetic process	2
GO:0090359	negative regulation of abscisic acid biosynthetic process	6
GO:1901601	strigolactone biosynthetic process	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V