PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_160
Name: RVE1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_383	CCA1	Not Available	96.33%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	82.41%
Matrix_157	LHY; RVE2	Not Available	77.15%
Matrix_114	EPR1; AT3G10113	Not Available	76.00%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	72.42%
Matrix_210	ARR1	Not Available	70.47%
Matrix_4	ARR14	Not Available	70.44%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	70.14%
Matrix_391	AHL20	Not Available	69.42%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	69.39%
Matrix_236	CCA1	Not Available	67.60%
Matrix_88	AHL12	Not Available	67.52%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	66.98%
Matrix_125	AHL12	Not Available	66.36%
Matrix_421	GLK1	Not Available	66.21%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	65.78%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	65.45%
Matrix_324	AT2G01060	Not Available	64.54%
Matrix_429	KAN4	Not Available	64.33%
Matrix_9	AT5G04760	Not Available	64.24%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	64.09%
Matrix_361	AT1G25550	Not Available	63.83%
Matrix_444	AT1G19485; AT4G17950	Not Available	63.75%
Matrix_16	AT3G04450; PHL1	Not Available	63.23%
Matrix_491	AT1G68670; AT3G25790	Not Available	63.07%
Matrix_434	ARR11	Not Available	63.01%
Matrix_67	GLK1	Not Available	62.94%
Matrix_97	APRR2	Not Available	62.80%
Matrix_32	AHL25	Not Available	62.37%
Matrix_442	AT5G62260	Not Available	61.62%
Matrix_62	HAT5	Not Available	61.46%
Matrix_8	KAN1	Not Available	61.46%
Matrix_336	AT5G08520	Not Available	61.29%
Motif_561	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	61.01%
Matrix_69	AT2G03500	Not Available	60.79%
Matrix_185	AHL25	Not Available	60.38%
Matrix_366	ARR14	Not Available	60.35%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	60.21%
Matrix_162	AtPHR1	Not Available	60.20%
Matrix_435	ATHB51	Not Available	60.04%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	59.74%
Matrix_168	AHL25	Not Available	59.67%
Matrix_255	cdf3	Not Available	59.46%
Matrix_54	AHL20	Not Available	59.34%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	59.11%
Matrix_447	RVE1	Not Available	59.00%
Matrix_441	ATHB5	Not Available	58.98%
Matrix_471	KAN4	Not Available	58.89%
Matrix_522	GATA11; GATA13	Not Available	58.86%
Matrix_143	GATA14; GATA6; GATA5	Not Available	58.73%
Matrix_327	ARR11	Not Available	58.73%
Matrix_318	ATHB16	Not Available	58.60%
Matrix_72	CDF2	Not Available	58.36%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	58.32%
Matrix_333	GATA3	Not Available	58.31%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	57.99%
Matrix_279	HRS1	Not Available	57.85%
Matrix_81	YAB1	Not Available	57.50%
Matrix_63	ARR10	Not Available	57.43%
Matrix_483	ICU4	Not Available	57.32%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	57.20%
Matrix_76	GATA10	Not Available	57.13%
Matrix_38	SPL14	Not Available	56.65%
Matrix_520	ARR14	Not Available	56.21%
Matrix_431	ATHB21; HB-3	Not Available	56.12%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	55.95%
Matrix_392	ARR2	Not Available	55.52%
Matrix_205	AGL15	Not Available	55.48%
Matrix_523	FUSCA3	Not Available	55.30%
Matrix_393	REM1	Not Available	55.26%
Matrix_354	AHL12	Not Available	55.15%
Matrix_258	WOX13	Not Available	55.12%
Matrix_237	MYB55	Not Available	55.09%
Motif_231	EIN3	Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3	55.02%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	54.89%
Matrix_93	YAB5	Not Available	54.55%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	54.55%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	54.52%
Matrix_178	HSFB2A	Not Available	54.43%
Matrix_182	ATHB6	Not Available	54.34%
Matrix_51	LFY	Not Available	54.28%
Matrix_70	GATA26	Not Available	54.21%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	53.99%
Matrix_461	ATHB12	Not Available	53.90%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	53.81%
Matrix_181	Dof5.7	Not Available	53.74%
Motif_673	Bellringer/replumless/pennywise BS2 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	53.69%
Matrix_423	AT3G04030	Not Available	53.69%
Matrix_227	AT1G64620	Not Available	53.64%
Motif_115	HSEs binding site motif	Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?	53.50%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.47%
Matrix_302	HAT1; HAT2	Not Available	53.47%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	53.39%
Motif_184	PROXBBNNAPA	prox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	53.33%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	53.30%
Matrix_129	ABF1	Not Available	53.13%
Matrix_328	AT1G76580	Not Available	53.12%
Matrix_408	GATA12	Not Available	53.10%
Motif_423	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	53.10%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	53.04%
Matrix_87	AT1G19000	Not Available	53.01%
Matrix_203	GATA9; GATA12	Not Available	52.82%
Matrix_6	AT1G70000	Not Available	52.81%
Matrix_259	AT1G50680; AT1G51120	Not Available	52.70%
Motif_248	L1-box	Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element	52.68%
Matrix_212	ATHB-12	Not Available	52.37%
Matrix_521	AHL20	Not Available	52.35%
Matrix_152	EIL1; AT5G65100	Not Available	52.32%
Motif_58	LREBOXIPCCHS1	BoxI; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; MRECHS (MRE=Myb Recognition Element)Recognition site of MYB305 and a novel factor PcMYB1 (Myb1 from P. crispum); PcMYB1 contains only one MYB repeat	52.08%
Matrix_501	DAG2	Not Available	51.96%
Matrix_106	AT5G47390	Not Available	51.90%
Motif_20	HSELIKENTGLN2	HSE-like sequence in 5' upstream region of beta-1,3-glucanase gene (GLN2) of tobacco	51.89%
Matrix_167	ZAT6	Not Available	51.73%
Matrix_495	HD-GL2-1; ANL2	Not Available	51.68%
Matrix_505	GATA8	Not Available	51.67%
Motif_12	CEREGLUBOX2PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	51.66%
Matrix_141	AT3G25990	Not Available	51.53%
Matrix_411	DOF5.6	Not Available	51.52%
Matrix_37	GATA27	Not Available	51.35%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	51.28%
Matrix_21	HSFC1	Not Available	51.28%
Matrix_195	GATA2; GATA4	Not Available	51.26%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.16%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	51.15%
Matrix_228	TGA2	Not Available	51.12%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	51.10%
Matrix_271	AT3G16350	Not Available	50.98%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	50.88%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.73%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	50.65%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	50.58%
Motif_25	GLUTAACAOS	glutelin common motif; AACA motif; Conserved in all member of rice glutelin	50.53%
Motif_590	MYB3 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	50.43%
Matrix_71	ATHB7	Not Available	50.41%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	50.39%
Matrix_512	HAT3	Not Available	50.39%
Matrix_120	BEE2	Not Available	50.33%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	50.14%
Motif_258	-10PEHVPSBD	-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light	50.11%
Motif_649	2SSEEDPROTBANAPA	Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter	50.08%
Matrix_282	bZIP60	Not Available	50.05%