| IGR sequence: | igr2044#chr5#x1=9109684#l=5223 |
|---|---|
| Mature miRNA sequence: | GGUGACAGAAGAGAGUGAGCACAC |
| encoded miRNA: | MIR17a |
| Precursor location: | 4188 - 4281 (positive strand) |
| precursor length: | 94 (35 basepairs) |
| MIR position: | 1 - 24 (4188 - 4211) |
| MIR length: | 24 (23 paired bases) |
| miRNA location TIGR v3: | chr5:9113871>9113964 |
| miRNA location TIGR v5: | chr5:9136127>9136220 |
| Folding energy: | -51.22 |
| BLAST hit against RFAM Atha miRNAs: | ath-MIR156f |
| Belongs to miRNAs-targets cluster: | cluster019 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** ****
GGUGACAGAA GAGAGUGAGC ACACAUGGUG GCUUUCUUGC AUAUUUGAAG GUUCCAUGCU 60
((((((-((( (((((((((( (((((((((- ---(((--(( ((________ _____))))-
UGAAGCUAUG UGUGCUCACU CUCUAUCCGU CACC 94
-))))))))) )))))))))) ))))-))-)) ))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g27360.1 | 68408.m03023 squamosa-promoter binding protein 2 -related | 4 | 6 |
| 2 | At1g27370.1 | 68408.m03024 squamosa-promoter binding protein 2 -related | 4 | 6 |
| 3 | At1g53160.1 | 68408.m05523 transcription factor -related | 3 | 8 |
| 4 | At1g69170.1 | 68408.m07265 squamosa-promoter binding protein -related | 4 | 6 |
| 5 | At2g42200.1 | 68409.m05466 squamosa-promoter binding protein -related | 4 | 8 |
| 6 | At2g42200.2 | 68409.m05467 squamosa-promoter binding protein -related | 4 | 8 |
| 7 | At3g57920.1 | 68410.m05967 squamosa promoter-binding protein homolog | 4 | 8 |
| 8 | At5g50570.1 | 68412.m07940 expressed protein | 3 | 8 |
| 9 | At5g50570.2 | 68412.m07941 expressed protein | 3 | 8 |
| 10 | At5g50670.1 | 68412.m05668 expressed protein | 3 | 8 |
Rice homologs
- gnl|BL_ORD_ID|2522_50927+51016_1-24
- gnl|BL_ORD_ID|2522_50927-51016_67-90
- gnl|BL_ORD_ID|640_18781+18870_1-24
- gnl|BL_ORD_ID|640_18781-18870_67-90