PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_157
Name: LHY; RVE2
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_336	AT5G08520	Not Available	80.60%
Matrix_447	RVE1	Not Available	76.86%
Matrix_210	ARR1	Not Available	75.20%
Matrix_4	ARR14	Not Available	74.70%
Matrix_160	RVE1	Not Available	74.61%
Matrix_114	EPR1; AT3G10113	Not Available	74.40%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	74.40%
Matrix_383	CCA1	Not Available	73.23%
Matrix_434	ARR11	Not Available	72.98%
Matrix_361	AT1G25550	Not Available	71.72%
Matrix_324	AT2G01060	Not Available	71.72%
Matrix_491	AT1G68670; AT3G25790	Not Available	70.65%
Matrix_152	EIL1; AT5G65100	Not Available	70.45%
Matrix_408	GATA12	Not Available	70.42%
Matrix_16	AT3G04450; PHL1	Not Available	70.33%
Matrix_182	ATHB6	Not Available	69.68%
Matrix_392	ARR2	Not Available	69.65%
Matrix_63	ARR10	Not Available	69.53%
Matrix_195	GATA2; GATA4	Not Available	69.34%
Matrix_69	AT2G03500	Not Available	69.22%
Matrix_271	AT3G16350	Not Available	69.01%
Matrix_9	AT5G04760	Not Available	69.00%
Matrix_97	APRR2	Not Available	68.81%
Matrix_471	KAN4	Not Available	68.51%
Matrix_162	AtPHR1	Not Available	68.27%
Matrix_421	GLK1	Not Available	67.18%
Matrix_226	GATA1	Not Available	67.15%
Matrix_6	AT1G70000	Not Available	67.01%
Matrix_106	AT5G47390	Not Available	66.99%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	66.36%
Matrix_366	ARR14	Not Available	66.21%
Matrix_99	DOF4.7	Not Available	65.85%
Matrix_286	GATA7	Not Available	65.76%
Matrix_76	GATA10	Not Available	65.69%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	65.47%
Matrix_502	AT3G13040	Not Available	65.41%
Matrix_46	AT4G21895	Not Available	65.24%
Matrix_26	ATMYB3; MYB24	Not Available	65.05%
Matrix_522	GATA11; GATA13	Not Available	64.72%
Matrix_279	HRS1	Not Available	64.30%
Matrix_67	GLK1	Not Available	63.73%
Matrix_425	TIFY2A	Not Available	63.27%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	63.11%
Matrix_350	ARR14	Not Available	62.61%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	62.61%
Matrix_327	ARR11	Not Available	62.52%
Motif_561	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	62.41%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	62.11%
Matrix_255	cdf3	Not Available	62.10%
Matrix_391	AHL20	Not Available	62.10%
Matrix_78	AT3G45610	Not Available	61.76%
Matrix_93	YAB5	Not Available	61.76%
Matrix_8	KAN1	Not Available	61.66%
Matrix_185	AHL25	Not Available	61.63%
Matrix_461	ATHB12	Not Available	61.45%
Matrix_126	RBE	Not Available	61.45%
Matrix_302	HAT1; HAT2	Not Available	61.06%
Matrix_230	ARR11	Not Available	61.06%
Matrix_505	GATA8	Not Available	61.05%
Matrix_318	ATHB16	Not Available	60.78%
Matrix_248	ZFP5	Not Available	60.71%
Matrix_236	CCA1	Not Available	60.49%
Matrix_71	ATHB7	Not Available	60.49%
Matrix_494	OBP4	Not Available	60.45%
Matrix_435	ATHB51	Not Available	60.37%
Matrix_379	RHL41	Not Available	60.27%
Matrix_85	SPL5	Not Available	60.17%
Matrix_218	TIFY2B; TIFY1	Not Available	60.13%
Matrix_258	WOX13	Not Available	60.11%
Matrix_254	MYB52	Not Available	60.10%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	59.92%
Matrix_503	AT2G37430; AT3G53600	Not Available	59.88%
Matrix_177	ADOF2	Not Available	59.55%
Matrix_311	TGA1	Not Available	59.55%
Matrix_198	STZ; C2H2; AZF3	Not Available	59.48%
Matrix_239	AT5G04390	Not Available	59.42%
Matrix_62	HAT5	Not Available	59.21%
Matrix_100	AT1G48610	Not Available	59.20%
Matrix_249	WRKY11	Not Available	59.10%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	59.09%
Matrix_143	GATA14; GATA6; GATA5	Not Available	59.07%
Matrix_81	YAB1	Not Available	59.02%
Matrix_341	HMGA	Not Available	58.83%
Matrix_38	SPL14	Not Available	58.79%
Matrix_88	AHL12	Not Available	58.69%
Matrix_436	AT3G49930; AZF1	Not Available	58.65%
Matrix_241	HB-1; AT5G44180	Not Available	58.55%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	58.52%
Matrix_444	AT1G19485; AT4G17950	Not Available	58.18%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	58.01%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	57.99%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	57.84%
Matrix_411	DOF5.6	Not Available	57.64%
Matrix_423	AT3G04030	Not Available	57.57%
Matrix_128	TGA2	Not Available	57.45%
Matrix_125	AHL12	Not Available	57.44%
Matrix_12	EIN3; EIL2	Not Available	57.41%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	57.30%
Matrix_87	AT1G19000	Not Available	57.08%
Matrix_500	WRKY43	Not Available	57.02%
Matrix_274	EDF3	Not Available	57.00%
Matrix_328	AT1G76580	Not Available	56.90%
Matrix_415	WRKY27	Not Available	56.70%
Matrix_308	INO	Not Available	56.60%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	56.58%
Matrix_429	KAN4	Not Available	56.23%
Matrix_142	ZFP8	Not Available	56.17%
Matrix_519	ATDOF2.4	Not Available	56.13%
Matrix_521	AHL20	Not Available	56.12%
Matrix_203	GATA9; GATA12	Not Available	56.06%
Matrix_32	AHL25	Not Available	55.97%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	55.94%
Matrix_35	YAB5; YAB3	Not Available	55.81%
Matrix_333	GATA3	Not Available	55.80%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	55.69%
Matrix_512	HAT3	Not Available	55.66%
Matrix_463	HAT3.1	Not Available	55.64%
Matrix_259	AT1G50680; AT1G51120	Not Available	55.60%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	55.53%
Matrix_416	ASL5	Not Available	55.52%
Matrix_37	GATA27	Not Available	55.44%
Matrix_393	REM1	Not Available	55.35%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	55.27%
Matrix_84	AtGRF6	Not Available	55.19%
Matrix_432	AT1G77920	Not Available	55.12%
Matrix_70	GATA26	Not Available	55.11%
Matrix_168	AHL25	Not Available	54.88%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	54.71%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	54.69%
Matrix_237	MYB55	Not Available	54.63%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	54.51%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	54.50%
Matrix_374	AT5G07580; AT5G61590	Not Available	54.49%
Matrix_72	CDF2	Not Available	54.44%
Matrix_442	AT5G62260	Not Available	54.27%
Matrix_54	AHL20	Not Available	54.26%
Matrix_227	AT1G64620	Not Available	54.19%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	53.97%
Matrix_431	ATHB21; HB-3	Not Available	53.85%
Matrix_260	CAMTA3	Not Available	53.80%
Matrix_487	AT1G29160	Not Available	53.68%
Matrix_441	ATHB5	Not Available	53.68%
Matrix_139	OBF5	Not Available	53.56%
Matrix_181	Dof5.7	Not Available	53.56%
Matrix_212	ATHB-12	Not Available	53.50%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	53.40%
Matrix_197	NAP	Not Available	53.40%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	53.31%
Matrix_112	TBP2; TFIID-1	Not Available	53.10%
Matrix_137	SPL1; SPL12	Not Available	53.09%
Matrix_52	ZAT18	Not Available	53.05%
Matrix_404	OBP4	Not Available	53.03%
Matrix_17	WRKY22	Not Available	53.01%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	52.83%
Matrix_347	WOX14; WOX10	Not Available	52.76%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	52.75%
Matrix_354	AHL12	Not Available	52.63%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	52.44%
Matrix_427	ZAT14	Not Available	52.41%
Matrix_243	RAP2.12; RAP2.2	Not Available	52.21%
Matrix_489	RAV1	Not Available	52.20%
Matrix_166	TGA4	Not Available	51.98%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	51.66%
Matrix_96	TMO6	Not Available	51.63%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	51.58%
Matrix_204	WOX13	Not Available	51.53%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.47%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	51.35%
Motif_582	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	51.34%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	51.29%
Motif_183	TRANSINITDICOTS	Context sequence of translational initiation codon in dicots	50.84%
Motif_422	SP8BFIBSP8BIB	One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	50.77%
Matrix_129	ABF1	Not Available	50.71%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	50.63%
Matrix_332	SPT; ALC	Not Available	50.59%
Matrix_418	KNAT6; KNAT2	Not Available	50.47%
Matrix_75	WRKY29	Not Available	50.46%
Matrix_382	AT3G04850	Not Available	50.43%
Motif_503	EECCRCAH1	EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1	50.35%
Matrix_53	MYC3	Not Available	50.24%
Matrix_91	CRF3	Not Available	50.17%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	50.15%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	50.11%
Matrix_80	BIM1	Not Available	50.10%
Matrix_120	BEE2	Not Available	50.06%
Matrix_151	ASIL1	Not Available	50.04%