Functional clusters

Information

  • Type InterPro
  • Description Metal-nicotianamine transporter YSL-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 5 CH_aag_184 2 2 0.0000802568
Allium sativum chr4 5 CH_asa_551 3 3 0.00000102503
Aegilops tauschii 6D 5 CH_ata_349 3 3 0.0000073617
Aegilops tauschii 2D 5 CH_ata_620 3 9 0.000411406
Amborella trichopoda AmTr_v1.0_scaffold00016 5 CH_atr_140 4 4 0.00000000273763
Amborella trichopoda AmTr_v1.0_scaffold00029 5 CH_atr_141 4 4 0.00000000273763
Amborella trichopoda AmTr_v1.0_scaffold00154 5 CH_atr_85 5 6 0.00000000000782702
Brachypodium distachyon Bd3 5 CH_bdi_285 3 3 0.00000650312
Brachypodium distachyon Bd5 5 CH_bdi_286 3 3 0.00000650312
Brachypodium distachyon Bd5 5 CH_bdi_346 3 4 0.0000260015
Brachypodium distachyon Bd5 5 CH_bdi_426 3 6 0.000129897
Calamus simplicifolius scaffold49 5 CH_calsi_173 3 3 0.000000378577
Cenchrus purpureus GWHAORA00000005 5 CH_cpu_1179 3 3 0.0000442326
Cenchrus purpureus GWHAORA00000004 5 CH_cpu_1180 3 3 0.0000442326
Cenchrus purpureus GWHAORA00000014 5 CH_cpu_1181 3 3 0.0000442326
Cenchrus purpureus GWHAORA00000013 5 CH_cpu_1182 3 3 0.0000442326
Cenchrus purpureus GWHAORA00000005 5 CH_cpu_1562 4 25 0.000468921
Cenchrus purpureus GWHAORA00000014 5 CH_cpu_187 6 6 0.000000000000025716
Cenchrus purpureus GWHAORA00000005 5 CH_cpu_572 4 4 0.0000000376046
Cenchrus purpureus GWHAORA00000005 5 CH_cpu_573 4 4 0.0000000376046
Dioscorea dumetorum contig95 5 CH_ddu_210 3 3 0.00000486898
Digitaria exilis Dexi_CM05836_chr01B 5 CH_dex_196 6 8 0.000000000000185233
Digitaria exilis Dexi_CM05836_chr01A 5 CH_dex_442 4 4 0.0000000152025
Digitaria exilis Dexi_CM05836_chrUA 5 CH_dex_584 4 6 0.000000227786
Digitaria exilis Dexi_CM05836_chr07A 5 CH_dex_891 3 3 0.0000221889
Digitaria exilis Dexi_CM05836_chr01B 5 CH_dex_892 3 3 0.0000221889
Eragrostis curvula 7 5 CH_ecu_1307 3 6 0.000245729
Eragrostis curvula Contig30 5 CH_ecu_528 4 4 0.0000000071557
Eragrostis curvula Contig30 5 CH_ecu_656 4 6 0.000000107235
Eragrostis curvula Contig30 5 CH_ecu_894 5 45 0.00000482344
Eragrostis curvula 1 5 CH_ecu_958 3 3 0.0000123033
Hordeum vulgare chr2H 5 CH_hvu_390 4 12 0.00000234966
Hordeum vulgare chr2H 5 CH_hvu_439 3 3 0.00000902754
Lolium perenne Lp_chr2_0 5 CH_lpe_345 3 3 0.00000206114
Lolium perenne Lp_chr2_0 5 CH_lpe_667 3 12 0.000452501
Musa acuminata chr11 5 CH_mac_202 3 5 0.0000176178
Magnolia biondii Chr06 5 CH_mbi_827 3 14 0.000108022
Miscanthus sinensis Chr12 5 CH_msi_260 4 4 0.00000000409826
Miscanthus sinensis Chr07 5 CH_msi_576 3 3 0.00000848503
Miscanthus sinensis Chr11 5 CH_msi_684 5 78 0.0000392568
Miscanthus sinensis Chr16 5 CH_msi_985 3 8 0.000474264
Oryza alta GWHAZTO00000016 5 CH_oal_1509 3 7 0.000368221
Oryza alta GWHAZTO00000016 5 CH_oal_345 4 4 0.00000000477688
Oryza alta GWHAZTO00000004 5 CH_oal_840 3 3 0.0000105354
Oryza alta GWHAZTO00000005 5 CH_oal_841 3 3 0.0000105354
Oryza alta GWHAZTO00000016 5 CH_oal_842 3 3 0.0000105354
Oryza alta GWHAZTO00000016 5 CH_oal_843 3 3 0.0000105354
Oryza alta GWHAZTO00000004 5 CH_oal_959 3 4 0.0000421267
Oryza alta GWHAZTO00000002 5 CH_oal_960 3 4 0.0000421267
Oryza brachyantha 4 5 CH_obr_381 3 5 0.0000823505
Oryza brachyantha 4 5 CH_obr_382 3 5 0.0000823505
Oryza sativa ssp. indica Chr4 5 CH_osaindica_359 3 3 0.00000326675
Oryza sativa Kitaake Chr4 5 CH_osak_520 3 4 0.000018413
Oryza sativa ssp. japonica chr04 5 CH_osa_410 3 5 0.0000136515
Oropetium thomaeum Chromosome_6 5 CH_oth_183 3 4 0.0000101095
Oropetium thomaeum Chromosome_6 5 CH_oth_184 3 3 0.0000101095
Oropetium thomaeum Chromosome_6 5 CH_oth_212 3 4 0.0000404171
Oropetium thomaeum Chromosome_5 5 CH_oth_344 3 7 0.000353102
Phyllostachys edulis hic_scaffold_23 5 CH_ped_45 8 8 3.74147e-20
Phyllostachys edulis hic_scaffold_24 5 CH_ped_598 3 3 0.0000518618
Panicum hallii Chr07 5 CH_pha_126 5 6 0.0000000000135096
Panicum hallii Chr01 5 CH_pha_390 3 3 0.00000780079
Panicum hallii Chr01 5 CH_pha_391 3 3 0.00000780079
Populus trichocarpa Chr17 5 CH_ptr_86 6 6 1.79693e-16
Sorghum bicolor Chr06 5 CH_sbi_117 5 5 0.00000000000234027
Sorghum bicolor Chr04 5 CH_sbi_441 3 3 0.00000795116
Secale cereale GWHASIY00000002 5 CH_sce_1147 3 5 0.000383191
Secale cereale GWHASIY00000002 5 CH_sce_431 4 5 0.00000017459
Secale cereale GWHASIY00000002 5 CH_sce_571 4 8 0.00000243888
Secale cereale GWHASIY00000006 5 CH_sce_783 3 3 0.0000383733
Secale cereale GWHASIY00000002 5 CH_sce_784 3 3 0.0000383733
Sequoiadendron giganteum HRSCAF_1 5 CH_sgi_401 5 6 0.000000000000117087
Setaria italica scaffold_7 5 CH_sit_161 5 6 0.0000000000271278
Setaria italica scaffold_1 5 CH_sit_505 3 3 0.0000116235
Setaria italica scaffold_1 5 CH_sit_506 3 3 0.0000116235
Setaria italica scaffold_7 5 CH_sit_563 3 4 0.0000464704
Saccharum spontaneum Chr1D 5 CH_ssp_1131 3 3 0.0000322939
Saccharum spontaneum Chr5D 5 CH_ssp_114 6 6 0.0000000000000106951
Saccharum spontaneum Chr4C 5 CH_ssp_1359 5 66 0.000135683
Saccharum spontaneum Chr5C 5 CH_ssp_415 4 4 0.0000000227302
Saccharum spontaneum Chr5B 5 CH_ssp_416 4 4 0.0000000227302
Saccharum spontaneum Chr5A 5 CH_ssp_795 6 77 0.00000243263
Setaria viridis Chr_07 5 CH_svi_156 5 6 0.0000000000177168
Setaria viridis Chr_01 5 CH_svi_499 3 3 0.00000939318
Setaria viridis Chr_01 5 CH_svi_500 3 3 0.00000939318
Setaria viridis Chr_07 5 CH_svi_629 3 5 0.0000938461
Triticum aestivum Chr2A 5 CH_tae_1595 4 10 0.00000617542
Triticum aestivum Chr2D 5 CH_tae_1596 4 10 0.00000617542
Triticum aestivum Chr2B 5 CH_tae_1662 4 11 0.0000096987
Triticum aestivum Chr6D 5 CH_tae_1866 3 3 0.0000415095
Triticum aestivum Chr2D 5 CH_tae_1867 3 3 0.0000415095
Triticum aestivum Chr2A 5 CH_tae_2144 3 4 0.000165948
Triticum aestivum Chr6D 5 CH_tae_2405 3 5 0.000414645
Triticum dicoccoides 2B 5 CH_tdi_1044 3 5 0.000274967
Triticum dicoccoides 2B 5 CH_tdi_458 4 6 0.000000293842
Triticum dicoccoides 2A 5 CH_tdi_546 4 8 0.00000136969
Triticum dicoccoides 2A 5 CH_tdi_768 3 3 0.0000275269
Triticum dicoccoides 2B 5 CH_tdi_769 3 3 0.0000275269
Triticum turgidum chr2A 5 CH_ttu_1000 3 4 0.0000889199
Triticum turgidum chr2B 5 CH_ttu_1245 3 6 0.000444138
Triticum turgidum chr2B 5 CH_ttu_623 4 8 0.00000104393
Zoysia japonica ssp. nagirizaki Zjn_sc00022.1 5 CH_zjn_187 3 3 0.00000363588
Zoysia japonica ssp. nagirizaki Zjn_sc00056.1 5 CH_zjn_57 4 4 0.00000000134515
Zea mays B104 scaffold2.445 5 CH_zma-b104_41 3 5 0.0000487173
Zea mays B73 10 5 CH_zma_285 3 3 0.0000159222
Anthoceros agrestis Sc2ySwM_228 6 CH_aag_184 2 2 0.0000802568
Allium sativum chr4 6 CH_asa_551 3 3 0.00000102503
Aegilops tauschii 6D 6 CH_ata_349 3 3 0.0000073617
Aegilops tauschii 2D 6 CH_ata_620 3 9 0.000411406
Amborella trichopoda AmTr_v1.0_scaffold00016 6 CH_atr_140 4 4 0.00000000273763
Amborella trichopoda AmTr_v1.0_scaffold00029 6 CH_atr_141 4 4 0.00000000273763
Amborella trichopoda AmTr_v1.0_scaffold00154 6 CH_atr_85 5 6 0.00000000000782702
Brachypodium distachyon Bd3 6 CH_bdi_285 3 3 0.00000650312
Brachypodium distachyon Bd5 6 CH_bdi_286 3 3 0.00000650312
Brachypodium distachyon Bd5 6 CH_bdi_346 3 4 0.0000260015
Brachypodium distachyon Bd5 6 CH_bdi_426 3 6 0.000129897
Calamus simplicifolius scaffold49 6 CH_calsi_173 3 3 0.000000378577
Cenchrus purpureus GWHAORA00000005 6 CH_cpu_1179 3 3 0.0000442326
Cenchrus purpureus GWHAORA00000004 6 CH_cpu_1180 3 3 0.0000442326
Cenchrus purpureus GWHAORA00000014 6 CH_cpu_1181 3 3 0.0000442326
Cenchrus purpureus GWHAORA00000013 6 CH_cpu_1182 3 3 0.0000442326
Cenchrus purpureus GWHAORA00000005 6 CH_cpu_1562 4 25 0.000468921
Cenchrus purpureus GWHAORA00000014 6 CH_cpu_187 6 6 0.000000000000025716
Cenchrus purpureus GWHAORA00000005 6 CH_cpu_572 4 4 0.0000000376046
Cenchrus purpureus GWHAORA00000005 6 CH_cpu_573 4 4 0.0000000376046
Dioscorea dumetorum contig95 6 CH_ddu_210 3 3 0.00000486898
Digitaria exilis Dexi_CM05836_chr01B 6 CH_dex_196 6 8 0.000000000000185233
Digitaria exilis Dexi_CM05836_chr01A 6 CH_dex_442 4 4 0.0000000152025
Digitaria exilis Dexi_CM05836_chrUA 6 CH_dex_584 4 6 0.000000227786
Digitaria exilis Dexi_CM05836_chr07A 6 CH_dex_891 3 3 0.0000221889
Digitaria exilis Dexi_CM05836_chr01B 6 CH_dex_892 3 3 0.0000221889
Eragrostis curvula 7 6 CH_ecu_1307 3 6 0.000245729
Eragrostis curvula Contig30 6 CH_ecu_528 4 4 0.0000000071557
Eragrostis curvula Contig30 6 CH_ecu_656 4 6 0.000000107235
Eragrostis curvula Contig30 6 CH_ecu_894 5 45 0.00000482344
Eragrostis curvula 1 6 CH_ecu_958 3 3 0.0000123033
Hordeum vulgare chr2H 6 CH_hvu_390 4 12 0.00000234966
Hordeum vulgare chr2H 6 CH_hvu_439 3 3 0.00000902754
Lolium perenne Lp_chr2_0 6 CH_lpe_345 3 3 0.00000206114
Lolium perenne Lp_chr2_0 6 CH_lpe_667 3 12 0.000452501
Musa acuminata chr11 6 CH_mac_202 3 5 0.0000176178
Magnolia biondii Chr06 6 CH_mbi_827 3 14 0.000108022
Miscanthus sinensis Chr12 6 CH_msi_260 4 4 0.00000000409826
Miscanthus sinensis Chr07 6 CH_msi_576 3 3 0.00000848503
Miscanthus sinensis Chr11 6 CH_msi_684 5 78 0.0000392568
Miscanthus sinensis Chr16 6 CH_msi_985 3 8 0.000474264
Oryza alta GWHAZTO00000016 6 CH_oal_1509 3 7 0.000368221
Oryza alta GWHAZTO00000016 6 CH_oal_345 4 4 0.00000000477688
Oryza alta GWHAZTO00000004 6 CH_oal_840 3 3 0.0000105354
Oryza alta GWHAZTO00000005 6 CH_oal_841 3 3 0.0000105354
Oryza alta GWHAZTO00000016 6 CH_oal_842 3 3 0.0000105354
Oryza alta GWHAZTO00000016 6 CH_oal_843 3 3 0.0000105354
Oryza alta GWHAZTO00000004 6 CH_oal_959 3 4 0.0000421267
Oryza alta GWHAZTO00000002 6 CH_oal_960 3 4 0.0000421267
Oryza brachyantha 4 6 CH_obr_381 3 5 0.0000823505
Oryza brachyantha 4 6 CH_obr_382 3 5 0.0000823505
Oryza sativa ssp. indica Chr4 6 CH_osaindica_359 3 3 0.00000326675
Oryza sativa Kitaake Chr4 6 CH_osak_520 3 4 0.000018413
Oryza sativa ssp. japonica chr04 6 CH_osa_410 3 5 0.0000136515
Oropetium thomaeum Chromosome_6 6 CH_oth_183 3 4 0.0000101095
Oropetium thomaeum Chromosome_6 6 CH_oth_184 3 3 0.0000101095
Oropetium thomaeum Chromosome_6 6 CH_oth_212 3 4 0.0000404171
Oropetium thomaeum Chromosome_5 6 CH_oth_344 3 7 0.000353102
Phyllostachys edulis hic_scaffold_23 6 CH_ped_45 8 8 3.74147e-20
Phyllostachys edulis hic_scaffold_24 6 CH_ped_598 3 3 0.0000518618
Panicum hallii Chr07 6 CH_pha_126 5 6 0.0000000000135096
Panicum hallii Chr01 6 CH_pha_390 3 3 0.00000780079
Panicum hallii Chr01 6 CH_pha_391 3 3 0.00000780079
Populus trichocarpa Chr17 6 CH_ptr_86 6 6 1.79693e-16
Sorghum bicolor Chr06 6 CH_sbi_117 5 5 0.00000000000234027
Sorghum bicolor Chr04 6 CH_sbi_441 3 3 0.00000795116
Secale cereale GWHASIY00000002 6 CH_sce_1147 3 5 0.000383191
Secale cereale GWHASIY00000002 6 CH_sce_431 4 5 0.00000017459
Secale cereale GWHASIY00000002 6 CH_sce_571 4 8 0.00000243888
Secale cereale GWHASIY00000006 6 CH_sce_783 3 3 0.0000383733
Secale cereale GWHASIY00000002 6 CH_sce_784 3 3 0.0000383733
Sequoiadendron giganteum HRSCAF_1 6 CH_sgi_401 5 6 0.000000000000117087
Setaria italica scaffold_7 6 CH_sit_161 5 6 0.0000000000271278
Setaria italica scaffold_1 6 CH_sit_505 3 3 0.0000116235
Setaria italica scaffold_1 6 CH_sit_506 3 3 0.0000116235
Setaria italica scaffold_7 6 CH_sit_563 3 4 0.0000464704
Saccharum spontaneum Chr1D 6 CH_ssp_1131 3 3 0.0000322939
Saccharum spontaneum Chr5D 6 CH_ssp_114 6 6 0.0000000000000106951
Saccharum spontaneum Chr4C 6 CH_ssp_1359 5 66 0.000135683
Saccharum spontaneum Chr5C 6 CH_ssp_415 4 4 0.0000000227302
Saccharum spontaneum Chr5B 6 CH_ssp_416 4 4 0.0000000227302
Saccharum spontaneum Chr5A 6 CH_ssp_795 6 77 0.00000243263
Setaria viridis Chr_07 6 CH_svi_156 5 6 0.0000000000177168
Setaria viridis Chr_01 6 CH_svi_499 3 3 0.00000939318
Setaria viridis Chr_01 6 CH_svi_500 3 3 0.00000939318
Setaria viridis Chr_07 6 CH_svi_629 3 5 0.0000938461
Triticum aestivum Chr2A 6 CH_tae_1595 4 10 0.00000617542
Triticum aestivum Chr2D 6 CH_tae_1596 4 10 0.00000617542
Triticum aestivum Chr2B 6 CH_tae_1662 4 11 0.0000096987
Triticum aestivum Chr6D 6 CH_tae_1866 3 3 0.0000415095
Triticum aestivum Chr2D 6 CH_tae_1867 3 3 0.0000415095
Triticum aestivum Chr2A 6 CH_tae_2144 3 4 0.000165948
Triticum aestivum Chr6D 6 CH_tae_2405 3 5 0.000414645
Triticum dicoccoides 2B 6 CH_tdi_1044 3 5 0.000274967
Triticum dicoccoides 2B 6 CH_tdi_458 4 6 0.000000293842
Triticum dicoccoides 2A 6 CH_tdi_546 4 8 0.00000136969
Triticum dicoccoides 2A 6 CH_tdi_768 3 3 0.0000275269
Triticum dicoccoides 2B 6 CH_tdi_769 3 3 0.0000275269
Triticum turgidum chr2A 6 CH_ttu_1000 3 4 0.0000889199
Triticum turgidum chr2B 6 CH_ttu_1245 3 6 0.000444138
Triticum turgidum chr2B 6 CH_ttu_623 4 8 0.00000104393
Zoysia japonica ssp. nagirizaki Zjn_sc00022.1 6 CH_zjn_187 3 3 0.00000363588
Zoysia japonica ssp. nagirizaki Zjn_sc00056.1 6 CH_zjn_57 4 4 0.00000000134515
Zea mays B104 scaffold2.445 6 CH_zma-b104_41 3 5 0.0000487173
Zea mays B73 10 6 CH_zma_285 3 3 0.0000159222

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001