Functional clusters
Information
- Type InterPro
- Description NRT1/PTR family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr2 | 5 | CH_asa_562 | 3 | 5 | 0.00000126134 |
| Allium sativum | chr1 | 5 | CH_asa_599 | 3 | 6 | 0.00000252246 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_136 | 4 | 6 | 0.00000000105899 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_354 | 3 | 8 | 0.0000250798 |
| Dioscorea dumetorum | contig705 | 5 | CH_ddu_182 | 3 | 3 | 0.00000118144 |
| Digitaria exilis | Dexi_CM05836_chr03A | 5 | CH_dex_1583 | 2 | 2 | 0.000935766 |
| Lolium perenne | Lp_chr1_0 | 5 | CH_lpe_790 | 2 | 3 | 0.000964227 |
| Magnolia biondii | Chr17 | 5 | CH_mbi_428 | 3 | 3 | 0.000000198133 |
| Oryza sativa Kitaake | Chr10 | 5 | CH_osak_813 | 2 | 2 | 0.000562857 |
| Oryza sativa ssp. japonica | chr10 | 5 | CH_osa_777 | 2 | 3 | 0.000950562 |
| Oropetium thomaeum | Chromosome_4 | 5 | CH_oth_397 | 2 | 2 | 0.000711845 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_164 | 5 | 7 | 0.0000000000204295 |
| Populus trichocarpa | Chr19 | 5 | CH_ptr_439 | 3 | 3 | 0.00000485607 |
| Setaria italica | scaffold_3 | 5 | CH_sit_743 | 2 | 2 | 0.00034826 |
| Setaria viridis | Chr_03 | 5 | CH_svi_735 | 2 | 2 | 0.000313071 |
| Vanilla planifolia | CM028153.1 | 5 | CH_vpl_145 | 3 | 3 | 0.000000163789 |
| Allium sativum | chr2 | 6 | CH_asa_562 | 3 | 5 | 0.00000126134 |
| Allium sativum | chr1 | 6 | CH_asa_599 | 3 | 6 | 0.00000252246 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_136 | 4 | 6 | 0.00000000105899 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_354 | 3 | 8 | 0.0000250798 |
| Dioscorea dumetorum | contig705 | 6 | CH_ddu_182 | 3 | 3 | 0.00000118144 |
| Digitaria exilis | Dexi_CM05836_chr03A | 6 | CH_dex_1583 | 2 | 2 | 0.000935766 |
| Lolium perenne | Lp_chr1_0 | 6 | CH_lpe_790 | 2 | 3 | 0.000964227 |
| Magnolia biondii | Chr17 | 6 | CH_mbi_428 | 3 | 3 | 0.000000198133 |
| Oryza sativa Kitaake | Chr10 | 6 | CH_osak_813 | 2 | 2 | 0.000562857 |
| Oryza sativa ssp. japonica | chr10 | 6 | CH_osa_777 | 2 | 3 | 0.000950562 |
| Oropetium thomaeum | Chromosome_4 | 6 | CH_oth_397 | 2 | 2 | 0.000711845 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_164 | 5 | 7 | 0.0000000000204295 |
| Populus trichocarpa | Chr19 | 6 | CH_ptr_439 | 3 | 3 | 0.00000485607 |
| Setaria italica | scaffold_3 | 6 | CH_sit_743 | 2 | 2 | 0.00034826 |
| Setaria viridis | Chr_03 | 6 | CH_svi_735 | 2 | 2 | 0.000313071 |
| Vanilla planifolia | CM028153.1 | 6 | CH_vpl_145 | 3 | 3 | 0.000000163789 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |