Functional clusters
Information
- Type InterPro
- Description Glutathione S-transferase L1/2/3
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_05 | 5 | CH_aof_134 | 3 | 25 | 0.0000196979 |
| Aegilops tauschii | 4D | 5 | CH_ata_186 | 3 | 3 | 0.0000000145488 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_418 | 2 | 2 | 0.0000859476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00023 | 5 | CH_atr_153 | 3 | 3 | 0.00000000946662 |
| Brachypodium distachyon | Bd1 | 5 | CH_bdi_149 | 3 | 3 | 0.000000022818 |
| Calamus simplicifolius | scaffold331 | 5 | CH_calsi_125 | 3 | 4 | 0.0000000270403 |
| Ceratophyllum demersum | 6 | 5 | CH_cde_300 | 2 | 2 | 0.000236939 |
| Cenchrus purpureus | GWHAORA00000006 | 5 | CH_cpu_715 | 3 | 3 | 0.000000315374 |
| Cenchrus purpureus | GWHAORA00000006 | 5 | CH_cpu_716 | 3 | 3 | 0.000000315374 |
| Cenchrus purpureus | GWHAORA00000012 | 5 | CH_cpu_717 | 3 | 3 | 0.000000315374 |
| Digitaria exilis | Dexi_CM05836_chr09A | 5 | CH_dex_1517 | 2 | 2 | 0.000701825 |
| Digitaria exilis | Dexi_CM05836_chr09B | 5 | CH_dex_506 | 3 | 3 | 0.0000000586388 |
| Eragrostis curvula | 5 | 5 | CH_ecu_1061 | 2 | 2 | 0.0000387725 |
| Glycine max | Gm13 | 5 | CH_gma_860 | 2 | 2 | 0.000569336 |
| Hordeum vulgare | chr4H | 5 | CH_hvu_176 | 4 | 10 | 0.00000000021052 |
| Lolium perenne | Lp_chr4_0 | 5 | CH_lpe_127 | 4 | 16 | 0.000000000181287 |
| Magnolia biondii | Chr14 | 5 | CH_mbi_279 | 3 | 3 | 0.00000000353808 |
| Miscanthus sinensis | Chr01 | 5 | CH_msi_192 | 4 | 6 | 0.000000000105146 |
| Oryza alta | GWHAZTO00000003 | 5 | CH_oal_1654 | 2 | 3 | 0.000604522 |
| Oryza alta | GWHAZTO00000001 | 5 | CH_oal_357 | 3 | 3 | 0.00000000609121 |
| Oryza brachyantha | 3 | 5 | CH_obr_415 | 2 | 3 | 0.000179195 |
| Oryza sativa ssp. indica | Chr3 | 5 | CH_osaindica_186 | 3 | 3 | 0.00000000400338 |
| Oryza sativa Kitaake | Chr3 | 5 | CH_osak_249 | 3 | 3 | 0.00000000475225 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_196 | 3 | 3 | 0.00000000418381 |
| Oropetium thomaeum | Chromosome_4 | 5 | CH_oth_85 | 3 | 3 | 0.0000000304045 |
| Phyllostachys edulis | hic_scaffold_21 | 5 | CH_ped_300 | 3 | 3 | 0.0000000871627 |
| Phyllostachys edulis | hic_scaffold_15 | 5 | CH_ped_936 | 2 | 2 | 0.000855659 |
| Panicum hallii | Chr09 | 5 | CH_pha_193 | 3 | 3 | 0.00000000506545 |
| Sorghum bicolor | Chr01 | 5 | CH_sbi_658 | 2 | 2 | 0.000352009 |
| Secale cereale | GWHASIY00000007 | 5 | CH_sce_241 | 4 | 8 | 0.000000000297237 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_2390 | 2 | 3 | 0.000438418 |
| Setaria italica | scaffold_9 | 5 | CH_sit_142 | 4 | 4 | 0.0000000000029335 |
| Solanum lycopersicum | SL4.0ch12 | 5 | CH_sly_933 | 2 | 2 | 0.000880411 |
| Saccharum spontaneum | Chr1B | 5 | CH_ssp_1674 | 2 | 2 | 0.000357884 |
| Setaria viridis | Chr_09 | 5 | CH_svi_136 | 4 | 4 | 0.00000000000213108 |
| Triticum aestivum | Chr4B | 5 | CH_tae_1424 | 3 | 5 | 0.00000191035 |
| Triticum aestivum | Chr4A | 5 | CH_tae_648 | 4 | 6 | 0.00000000029483 |
| Triticum aestivum | Chr4D | 5 | CH_tae_692 | 4 | 7 | 0.000000000687879 |
| Triticum dicoccoides | 4A | 5 | CH_tdi_434 | 3 | 4 | 0.000000185044 |
| Triticum turgidum | chr4A | 5 | CH_ttu_268 | 4 | 6 | 0.0000000000961538 |
| Triticum turgidum | chr4B | 5 | CH_ttu_608 | 3 | 5 | 0.000000820383 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00003.1 | 5 | CH_zjn_487 | 2 | 3 | 0.000332947 |
| Zea mays B73 | 1 | 5 | CH_zma_152 | 3 | 3 | 0.0000000392171 |
| Asparagus officinalis | AsparagusV1_05 | 6 | CH_aof_134 | 3 | 25 | 0.0000196979 |
| Aegilops tauschii | 4D | 6 | CH_ata_186 | 3 | 3 | 0.0000000145488 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_418 | 2 | 2 | 0.0000859476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00023 | 6 | CH_atr_153 | 3 | 3 | 0.00000000946662 |
| Brachypodium distachyon | Bd1 | 6 | CH_bdi_149 | 3 | 3 | 0.000000022818 |
| Calamus simplicifolius | scaffold331 | 6 | CH_calsi_125 | 3 | 4 | 0.0000000270403 |
| Ceratophyllum demersum | 6 | 6 | CH_cde_300 | 2 | 2 | 0.000236939 |
| Cenchrus purpureus | GWHAORA00000006 | 6 | CH_cpu_715 | 3 | 3 | 0.000000315374 |
| Cenchrus purpureus | GWHAORA00000006 | 6 | CH_cpu_716 | 3 | 3 | 0.000000315374 |
| Cenchrus purpureus | GWHAORA00000012 | 6 | CH_cpu_717 | 3 | 3 | 0.000000315374 |
| Digitaria exilis | Dexi_CM05836_chr09A | 6 | CH_dex_1517 | 2 | 2 | 0.000701825 |
| Digitaria exilis | Dexi_CM05836_chr09B | 6 | CH_dex_506 | 3 | 3 | 0.0000000586388 |
| Eragrostis curvula | 5 | 6 | CH_ecu_1061 | 2 | 2 | 0.0000387725 |
| Glycine max | Gm13 | 6 | CH_gma_860 | 2 | 2 | 0.000569336 |
| Hordeum vulgare | chr4H | 6 | CH_hvu_176 | 4 | 10 | 0.00000000021052 |
| Lolium perenne | Lp_chr4_0 | 6 | CH_lpe_127 | 4 | 16 | 0.000000000181287 |
| Magnolia biondii | Chr14 | 6 | CH_mbi_279 | 3 | 3 | 0.00000000353808 |
| Miscanthus sinensis | Chr01 | 6 | CH_msi_192 | 4 | 6 | 0.000000000105146 |
| Oryza alta | GWHAZTO00000003 | 6 | CH_oal_1654 | 2 | 3 | 0.000604522 |
| Oryza alta | GWHAZTO00000001 | 6 | CH_oal_357 | 3 | 3 | 0.00000000609121 |
| Oryza brachyantha | 3 | 6 | CH_obr_415 | 2 | 3 | 0.000179195 |
| Oryza sativa ssp. indica | Chr3 | 6 | CH_osaindica_186 | 3 | 3 | 0.00000000400338 |
| Oryza sativa Kitaake | Chr3 | 6 | CH_osak_249 | 3 | 3 | 0.00000000475225 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_196 | 3 | 3 | 0.00000000418381 |
| Oropetium thomaeum | Chromosome_4 | 6 | CH_oth_85 | 3 | 3 | 0.0000000304045 |
| Phyllostachys edulis | hic_scaffold_21 | 6 | CH_ped_300 | 3 | 3 | 0.0000000871627 |
| Phyllostachys edulis | hic_scaffold_15 | 6 | CH_ped_936 | 2 | 2 | 0.000855659 |
| Panicum hallii | Chr09 | 6 | CH_pha_193 | 3 | 3 | 0.00000000506545 |
| Sorghum bicolor | Chr01 | 6 | CH_sbi_658 | 2 | 2 | 0.000352009 |
| Secale cereale | GWHASIY00000007 | 6 | CH_sce_241 | 4 | 8 | 0.000000000297237 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_2390 | 2 | 3 | 0.000438418 |
| Setaria italica | scaffold_9 | 6 | CH_sit_142 | 4 | 4 | 0.0000000000029335 |
| Solanum lycopersicum | SL4.0ch12 | 6 | CH_sly_933 | 2 | 2 | 0.000880411 |
| Saccharum spontaneum | Chr1B | 6 | CH_ssp_1674 | 2 | 2 | 0.000357884 |
| Setaria viridis | Chr_09 | 6 | CH_svi_136 | 4 | 4 | 0.00000000000213108 |
| Triticum aestivum | Chr4B | 6 | CH_tae_1424 | 3 | 5 | 0.00000191035 |
| Triticum aestivum | Chr4A | 6 | CH_tae_648 | 4 | 6 | 0.00000000029483 |
| Triticum aestivum | Chr4D | 6 | CH_tae_692 | 4 | 7 | 0.000000000687879 |
| Triticum dicoccoides | 4A | 6 | CH_tdi_434 | 3 | 4 | 0.000000185044 |
| Triticum turgidum | chr4A | 6 | CH_ttu_268 | 4 | 6 | 0.0000000000961538 |
| Triticum turgidum | chr4B | 6 | CH_ttu_608 | 3 | 5 | 0.000000820383 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00003.1 | 6 | CH_zjn_487 | 2 | 3 | 0.000332947 |
| Zea mays B73 | 1 | 6 | CH_zma_152 | 3 | 3 | 0.0000000392171 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |