Functional clusters
Information
- Type InterPro
- Description Plant glutamate receptor, periplasmic ligand-binding domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_05 | 5 | CH_aof_395 | 2 | 2 | 0.000755915 |
| Allium sativum | chr8 | 5 | CH_asa_223 | 5 | 20 | 0.000000000207334 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 5 | CH_atr_8 | 14 | 24 | 3.3484e-35 |
| Dioscorea dumetorum | contig560 | 5 | CH_ddu_222 | 3 | 5 | 0.00000858861 |
| Digitaria exilis | Dexi_CM05836_chr04A | 5 | CH_dex_1584 | 2 | 2 | 0.000935766 |
| Eragrostis curvula | 1 | 5 | CH_ecu_772 | 4 | 13 | 0.000000746415 |
| Glycine max | Gm09 | 5 | CH_gma_478 | 3 | 3 | 0.00000707942 |
| Glycine max | Gm06 | 5 | CH_gma_536 | 3 | 4 | 0.0000283071 |
| Glycine max | Gm13 | 5 | CH_gma_678 | 3 | 6 | 0.000141429 |
| Hordeum vulgare | chr6H | 5 | CH_hvu_474 | 3 | 5 | 0.0000167922 |
| Miscanthus sinensis | Chr18 | 5 | CH_msi_803 | 3 | 8 | 0.000115694 |
| Oryza alta | GWHAZTO00000021 | 5 | CH_oal_207 | 5 | 10 | 0.0000000000104791 |
| Phyllostachys edulis | hic_scaffold_22 | 5 | CH_ped_246 | 4 | 5 | 0.00000000898269 |
| Sorghum bicolor | Chr10 | 5 | CH_sbi_515 | 3 | 6 | 0.000057772 |
| Secale cereale | GWHASIY00000004 | 5 | CH_sce_667 | 3 | 3 | 0.00000909503 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_883 | 4 | 4 | 0.0000000109137 |
| Setaria italica | scaffold_4 | 5 | CH_sit_531 | 3 | 5 | 0.000022981 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_116 | 5 | 5 | 0.000000000000114576 |
| Setaria viridis | Chr_04 | 5 | CH_svi_467 | 3 | 4 | 0.00000467105 |
| Triticum aestivum | Chr6B | 5 | CH_tae_1779 | 4 | 16 | 0.000021176 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00066.1 | 5 | CH_zjn_549 | 2 | 2 | 0.000554929 |
| Asparagus officinalis | AsparagusV1_05 | 6 | CH_aof_395 | 2 | 2 | 0.000755915 |
| Allium sativum | chr8 | 6 | CH_asa_223 | 5 | 20 | 0.000000000207334 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 6 | CH_atr_8 | 14 | 24 | 3.3484e-35 |
| Dioscorea dumetorum | contig560 | 6 | CH_ddu_222 | 3 | 5 | 0.00000858861 |
| Digitaria exilis | Dexi_CM05836_chr04A | 6 | CH_dex_1584 | 2 | 2 | 0.000935766 |
| Eragrostis curvula | 1 | 6 | CH_ecu_772 | 4 | 13 | 0.000000746415 |
| Glycine max | Gm09 | 6 | CH_gma_478 | 3 | 3 | 0.00000707942 |
| Glycine max | Gm06 | 6 | CH_gma_536 | 3 | 4 | 0.0000283071 |
| Glycine max | Gm13 | 6 | CH_gma_678 | 3 | 6 | 0.000141429 |
| Hordeum vulgare | chr6H | 6 | CH_hvu_474 | 3 | 5 | 0.0000167922 |
| Miscanthus sinensis | Chr18 | 6 | CH_msi_803 | 3 | 8 | 0.000115694 |
| Oryza alta | GWHAZTO00000021 | 6 | CH_oal_207 | 5 | 10 | 0.0000000000104791 |
| Phyllostachys edulis | hic_scaffold_22 | 6 | CH_ped_246 | 4 | 5 | 0.00000000898269 |
| Sorghum bicolor | Chr10 | 6 | CH_sbi_515 | 3 | 6 | 0.000057772 |
| Secale cereale | GWHASIY00000004 | 6 | CH_sce_667 | 3 | 3 | 0.00000909503 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_883 | 4 | 4 | 0.0000000109137 |
| Setaria italica | scaffold_4 | 6 | CH_sit_531 | 3 | 5 | 0.000022981 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_116 | 5 | 5 | 0.000000000000114576 |
| Setaria viridis | Chr_04 | 6 | CH_svi_467 | 3 | 4 | 0.00000467105 |
| Triticum aestivum | Chr6B | 6 | CH_tae_1779 | 4 | 16 | 0.000021176 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00066.1 | 6 | CH_zjn_549 | 2 | 2 | 0.000554929 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |