Functional clusters
Information
- Type InterPro
- Description Type 1 protein exporter
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_05 | 5 | CH_aof_314 | 3 | 7 | 0.00034129 |
| Amborella trichopoda | AmTr_v1.0_scaffold00049 | 5 | CH_atr_295 | 3 | 3 | 0.00000530131 |
| Ceratophyllum demersum | 7 | 5 | CH_cde_105 | 4 | 8 | 0.000000500221 |
| Ceratophyllum demersum | 10 | 5 | CH_cde_471 | 3 | 8 | 0.000595733 |
| Cenchrus purpureus | GWHAORA00000013 | 5 | CH_cpu_105 | 9 | 12 | 2.75805e-19 |
| Cenchrus purpureus | GWHAORA00000007 | 5 | CH_cpu_110 | 9 | 13 | 8.95293e-19 |
| Cenchrus purpureus | GWHAORA00000013 | 5 | CH_cpu_1407 | 3 | 3 | 0.000192154 |
| Cenchrus purpureus | GWHAORA00000004 | 5 | CH_cpu_186 | 9 | 31 | 0.0000000000000247047 |
| Cenchrus purpureus | GWHAORA00000005 | 5 | CH_cpu_277 | 6 | 7 | 0.00000000000361691 |
| Dioscorea dumetorum | contig94 | 5 | CH_ddu_73 | 5 | 5 | 0.0000000000202978 |
| Digitaria exilis | Dexi_CM05836_chrUA | 5 | CH_dex_1117 | 3 | 3 | 0.000153937 |
| Digitaria exilis | Dexi_CM05836_chr01B | 5 | CH_dex_123 | 8 | 12 | 2.85194e-16 |
| Digitaria exilis | Dexi_CM05836_chr05B | 5 | CH_dex_1500 | 3 | 4 | 0.00061512 |
| Digitaria exilis | Dexi_CM05836_chr01A | 5 | CH_dex_307 | 6 | 11 | 0.000000000162692 |
| Digitaria exilis | Dexi_CM05836_chr01A | 5 | CH_dex_480 | 5 | 9 | 0.0000000340807 |
| Digitaria exilis | Dexi_CM05836_chr01B | 5 | CH_dex_50 | 10 | 12 | 9.85746e-24 |
| Eragrostis curvula | 1 | 5 | CH_ecu_354 | 5 | 5 | 0.00000000000639054 |
| Glycine max | Gm19 | 5 | CH_gma_514 | 3 | 3 | 0.0000167909 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_794 | 3 | 5 | 0.0000544461 |
| Miscanthus sinensis | Chr08 | 5 | CH_msi_381 | 4 | 6 | 0.000000167982 |
| Oryza alta | GWHAZTO00000020 | 5 | CH_oal_1144 | 3 | 4 | 0.0000791733 |
| Oryza alta | GWHAZTO00000002 | 5 | CH_oal_590 | 4 | 7 | 0.00000039053 |
| Oryza alta | GWHAZTO00000014 | 5 | CH_oal_591 | 4 | 7 | 0.00000039053 |
| Oryza brachyantha | 1 | 5 | CH_obr_216 | 4 | 8 | 0.000000474681 |
| Oryza sativa ssp. indica | Chr2 | 5 | CH_osaindica_511 | 3 | 6 | 0.0000809582 |
| Oryza sativa ssp. indica | Chr1 | 5 | CH_osaindica_582 | 3 | 6 | 0.000161846 |
| Oryza sativa Kitaake | Chr2 | 5 | CH_osak_260 | 4 | 4 | 0.00000000799822 |
| Oryza sativa Kitaake | Chr1 | 5 | CH_osak_726 | 3 | 6 | 0.000246737 |
| Oryza sativa ssp. japonica | chr02 | 5 | CH_osa_552 | 3 | 6 | 0.000128706 |
| Phyllostachys edulis | hic_scaffold_22 | 5 | CH_ped_377 | 4 | 6 | 0.000000822836 |
| Phyllostachys edulis | hic_scaffold_14 | 5 | CH_ped_561 | 4 | 13 | 0.000039002 |
| Panicum hallii | Chr01 | 5 | CH_pha_150 | 5 | 7 | 0.000000000213062 |
| Populus trichocarpa | Chr15 | 5 | CH_ptr_475 | 3 | 3 | 0.0000130297 |
| Sorghum bicolor | Chr04 | 5 | CH_sbi_222 | 4 | 5 | 0.00000000536484 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_1064 | 4 | 4 | 0.0000000939016 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_334 | 10 | 60 | 0.0000000000000022224 |
| Setaria italica | scaffold_1 | 5 | CH_sit_252 | 4 | 4 | 0.0000000120127 |
| Saccharum spontaneum | Chr4C | 5 | CH_ssp_1026 | 4 | 11 | 0.0000137696 |
| Saccharum spontaneum | Chr6B | 5 | CH_ssp_1903 | 3 | 5 | 0.000508616 |
| Saccharum spontaneum | Chr4A | 5 | CH_ssp_447 | 4 | 4 | 0.0000000419196 |
| Setaria viridis | Chr_01 | 5 | CH_svi_246 | 4 | 4 | 0.00000000637191 |
| Triticum aestivum | Chr6B | 5 | CH_tae_1884 | 3 | 3 | 0.0000447855 |
| Triticum aestivum | Chr6D | 5 | CH_tae_1885 | 3 | 3 | 0.0000447855 |
| Triticum aestivum | Chr2B | 5 | CH_tae_1886 | 3 | 3 | 0.0000447855 |
| Triticum aestivum | Chr2A | 5 | CH_tae_2166 | 3 | 4 | 0.000179042 |
| Triticum dicoccoides | 2A | 5 | CH_tdi_929 | 3 | 4 | 0.000116784 |
| Triticum turgidum | chr2A | 5 | CH_ttu_1099 | 3 | 4 | 0.000171374 |
| Triticum turgidum | chr2B | 5 | CH_ttu_912 | 3 | 3 | 0.0000428714 |
| Vanilla planifolia | JADCNL010000193.1 | 5 | CH_vpl_194 | 4 | 8 | 0.0000010689 |
| Vanilla planifolia | CM028160.1 | 5 | CH_vpl_307 | 3 | 3 | 0.0000188357 |
| Vanilla planifolia | CM028151.1 | 5 | CH_vpl_67 | 5 | 7 | 0.000000000249141 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00017.1 | 5 | CH_zjn_207 | 3 | 3 | 0.00000833522 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00022.1 | 5 | CH_zjn_259 | 3 | 4 | 0.0000333278 |
| Zea mays B73 | 4 | 5 | CH_zma_140 | 4 | 4 | 0.0000000209998 |
| Asparagus officinalis | AsparagusV1_05 | 6 | CH_aof_314 | 3 | 7 | 0.00034129 |
| Amborella trichopoda | AmTr_v1.0_scaffold00049 | 6 | CH_atr_295 | 3 | 3 | 0.00000530131 |
| Ceratophyllum demersum | 7 | 6 | CH_cde_105 | 4 | 8 | 0.000000500221 |
| Ceratophyllum demersum | 10 | 6 | CH_cde_471 | 3 | 8 | 0.000595733 |
| Cenchrus purpureus | GWHAORA00000013 | 6 | CH_cpu_105 | 9 | 12 | 2.75805e-19 |
| Cenchrus purpureus | GWHAORA00000007 | 6 | CH_cpu_110 | 9 | 13 | 8.95293e-19 |
| Cenchrus purpureus | GWHAORA00000013 | 6 | CH_cpu_1407 | 3 | 3 | 0.000192154 |
| Cenchrus purpureus | GWHAORA00000004 | 6 | CH_cpu_186 | 9 | 31 | 0.0000000000000247047 |
| Cenchrus purpureus | GWHAORA00000005 | 6 | CH_cpu_277 | 6 | 7 | 0.00000000000361691 |
| Dioscorea dumetorum | contig94 | 6 | CH_ddu_73 | 5 | 5 | 0.0000000000202978 |
| Digitaria exilis | Dexi_CM05836_chrUA | 6 | CH_dex_1117 | 3 | 3 | 0.000153937 |
| Digitaria exilis | Dexi_CM05836_chr01B | 6 | CH_dex_123 | 8 | 12 | 2.85194e-16 |
| Digitaria exilis | Dexi_CM05836_chr05B | 6 | CH_dex_1500 | 3 | 4 | 0.00061512 |
| Digitaria exilis | Dexi_CM05836_chr01A | 6 | CH_dex_307 | 6 | 11 | 0.000000000162692 |
| Digitaria exilis | Dexi_CM05836_chr01A | 6 | CH_dex_480 | 5 | 9 | 0.0000000340807 |
| Digitaria exilis | Dexi_CM05836_chr01B | 6 | CH_dex_50 | 10 | 12 | 9.85746e-24 |
| Eragrostis curvula | 1 | 6 | CH_ecu_354 | 5 | 5 | 0.00000000000639054 |
| Glycine max | Gm19 | 6 | CH_gma_514 | 3 | 3 | 0.0000167909 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_794 | 3 | 5 | 0.0000544461 |
| Miscanthus sinensis | Chr08 | 6 | CH_msi_381 | 4 | 6 | 0.000000167982 |
| Oryza alta | GWHAZTO00000020 | 6 | CH_oal_1144 | 3 | 4 | 0.0000791733 |
| Oryza alta | GWHAZTO00000002 | 6 | CH_oal_590 | 4 | 7 | 0.00000039053 |
| Oryza alta | GWHAZTO00000014 | 6 | CH_oal_591 | 4 | 7 | 0.00000039053 |
| Oryza brachyantha | 1 | 6 | CH_obr_216 | 4 | 8 | 0.000000474681 |
| Oryza sativa ssp. indica | Chr2 | 6 | CH_osaindica_511 | 3 | 6 | 0.0000809582 |
| Oryza sativa ssp. indica | Chr1 | 6 | CH_osaindica_582 | 3 | 6 | 0.000161846 |
| Oryza sativa Kitaake | Chr2 | 6 | CH_osak_260 | 4 | 4 | 0.00000000799822 |
| Oryza sativa Kitaake | Chr1 | 6 | CH_osak_726 | 3 | 6 | 0.000246737 |
| Oryza sativa ssp. japonica | chr02 | 6 | CH_osa_552 | 3 | 6 | 0.000128706 |
| Phyllostachys edulis | hic_scaffold_22 | 6 | CH_ped_377 | 4 | 6 | 0.000000822836 |
| Phyllostachys edulis | hic_scaffold_14 | 6 | CH_ped_561 | 4 | 13 | 0.000039002 |
| Panicum hallii | Chr01 | 6 | CH_pha_150 | 5 | 7 | 0.000000000213062 |
| Populus trichocarpa | Chr15 | 6 | CH_ptr_475 | 3 | 3 | 0.0000130297 |
| Sorghum bicolor | Chr04 | 6 | CH_sbi_222 | 4 | 5 | 0.00000000536484 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_1064 | 4 | 4 | 0.0000000939016 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_334 | 10 | 60 | 0.0000000000000022224 |
| Setaria italica | scaffold_1 | 6 | CH_sit_252 | 4 | 4 | 0.0000000120127 |
| Saccharum spontaneum | Chr4C | 6 | CH_ssp_1026 | 4 | 11 | 0.0000137696 |
| Saccharum spontaneum | Chr6B | 6 | CH_ssp_1903 | 3 | 5 | 0.000508616 |
| Saccharum spontaneum | Chr4A | 6 | CH_ssp_447 | 4 | 4 | 0.0000000419196 |
| Setaria viridis | Chr_01 | 6 | CH_svi_246 | 4 | 4 | 0.00000000637191 |
| Triticum aestivum | Chr6B | 6 | CH_tae_1884 | 3 | 3 | 0.0000447855 |
| Triticum aestivum | Chr6D | 6 | CH_tae_1885 | 3 | 3 | 0.0000447855 |
| Triticum aestivum | Chr2B | 6 | CH_tae_1886 | 3 | 3 | 0.0000447855 |
| Triticum aestivum | Chr2A | 6 | CH_tae_2166 | 3 | 4 | 0.000179042 |
| Triticum dicoccoides | 2A | 6 | CH_tdi_929 | 3 | 4 | 0.000116784 |
| Triticum turgidum | chr2A | 6 | CH_ttu_1099 | 3 | 4 | 0.000171374 |
| Triticum turgidum | chr2B | 6 | CH_ttu_912 | 3 | 3 | 0.0000428714 |
| Vanilla planifolia | JADCNL010000193.1 | 6 | CH_vpl_194 | 4 | 8 | 0.0000010689 |
| Vanilla planifolia | CM028160.1 | 6 | CH_vpl_307 | 3 | 3 | 0.0000188357 |
| Vanilla planifolia | CM028151.1 | 6 | CH_vpl_67 | 5 | 7 | 0.000000000249141 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00017.1 | 6 | CH_zjn_207 | 3 | 3 | 0.00000833522 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00022.1 | 6 | CH_zjn_259 | 3 | 4 | 0.0000333278 |
| Zea mays B73 | 4 | 6 | CH_zma_140 | 4 | 4 | 0.0000000209998 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |