Functional clusters
Information
- Type InterPro
- Description Ureide permease, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 7D | 5 | CH_ata_642 | 2 | 2 | 0.000492417 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_176 | 4 | 35 | 0.0000000184544 |
| Brachypodium distachyon | Bd4 | 5 | CH_bdi_46 | 5 | 7 | 0.00000000000000227803 |
| Cenchrus purpureus | GWHAORA00000003 | 5 | CH_cpu_59 | 10 | 41 | 6.13978e-25 |
| Cenchrus purpureus | GWHAORA00000008 | 5 | CH_cpu_654 | 4 | 15 | 0.00000016487 |
| Digitaria exilis | Dexi_CM05836_chr03B | 5 | CH_dex_23 | 12 | 21 | 2.07459e-32 |
| Digitaria exilis | Dexi_CM05836_chr03A | 5 | CH_dex_73 | 8 | 13 | 2.03976e-20 |
| Eragrostis curvula | 6 | 5 | CH_ecu_79 | 10 | 39 | 8.91439e-25 |
| Glycine max | Gm02 | 5 | CH_gma_624 | 2 | 2 | 0.000113867 |
| Lolium perenne | Lp_chr5_0 | 5 | CH_lpe_327 | 3 | 12 | 0.00000136342 |
| Magnolia biondii | Chr19 | 5 | CH_mbi_380 | 3 | 6 | 0.0000000707565 |
| Miscanthus sinensis | Chr14 | 5 | CH_msi_656 | 3 | 31 | 0.00002794 |
| Oryza alta | GWHAZTO00000012 | 5 | CH_oal_224 | 4 | 7 | 0.0000000000300703 |
| Oryza brachyantha | 12 | 5 | CH_obr_62 | 4 | 4 | 0.000000000000639464 |
| Oryza sativa ssp. indica | Chr12 | 5 | CH_osaindica_453 | 2 | 2 | 0.0000516609 |
| Oryza sativa Kitaake | Chr12 | 5 | CH_osak_276 | 3 | 4 | 0.0000000190085 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_227 | 3 | 5 | 0.0000000418359 |
| Oropetium thomaeum | Chromosome_10 | 5 | CH_oth_33 | 5 | 18 | 0.00000000000989369 |
| Phyllostachys edulis | hic_scaffold_11 | 5 | CH_ped_858 | 2 | 2 | 0.000611185 |
| Phyllostachys edulis | hic_scaffold_12 | 5 | CH_ped_859 | 2 | 2 | 0.000611185 |
| Panicum hallii | Chr03 | 5 | CH_pha_175 | 4 | 17 | 0.00000000140069 |
| Populus trichocarpa | Chr08 | 5 | CH_ptr_531 | 2 | 2 | 0.0000578001 |
| Sorghum bicolor | Chr08 | 5 | CH_sbi_465 | 3 | 18 | 0.0000168394 |
| Secale cereale | GWHASIY00000005 | 5 | CH_sce_1208 | 2 | 2 | 0.00045529 |
| Setaria italica | scaffold_3 | 5 | CH_sit_233 | 4 | 16 | 0.00000000533563 |
| Saccharum spontaneum | Chr2A | 5 | CH_ssp_2120 | 2 | 2 | 0.000858922 |
| Saccharum spontaneum | Chr2D | 5 | CH_ssp_2121 | 2 | 2 | 0.000858922 |
| Setaria viridis | Chr_03 | 5 | CH_svi_135 | 5 | 17 | 0.00000000000206322 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00038.1 | 5 | CH_zjn_123 | 4 | 33 | 0.000000217167 |
| Aegilops tauschii | 7D | 6 | CH_ata_642 | 2 | 2 | 0.000492417 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_176 | 4 | 35 | 0.0000000184544 |
| Brachypodium distachyon | Bd4 | 6 | CH_bdi_46 | 5 | 7 | 0.00000000000000227803 |
| Cenchrus purpureus | GWHAORA00000003 | 6 | CH_cpu_59 | 10 | 41 | 6.13978e-25 |
| Cenchrus purpureus | GWHAORA00000008 | 6 | CH_cpu_654 | 4 | 15 | 0.00000016487 |
| Digitaria exilis | Dexi_CM05836_chr03B | 6 | CH_dex_23 | 12 | 21 | 2.07459e-32 |
| Digitaria exilis | Dexi_CM05836_chr03A | 6 | CH_dex_73 | 8 | 13 | 2.03976e-20 |
| Eragrostis curvula | 6 | 6 | CH_ecu_79 | 10 | 39 | 8.91439e-25 |
| Glycine max | Gm02 | 6 | CH_gma_624 | 2 | 2 | 0.000113867 |
| Lolium perenne | Lp_chr5_0 | 6 | CH_lpe_327 | 3 | 12 | 0.00000136342 |
| Magnolia biondii | Chr19 | 6 | CH_mbi_380 | 3 | 6 | 0.0000000707565 |
| Miscanthus sinensis | Chr14 | 6 | CH_msi_656 | 3 | 31 | 0.00002794 |
| Oryza alta | GWHAZTO00000012 | 6 | CH_oal_224 | 4 | 7 | 0.0000000000300703 |
| Oryza brachyantha | 12 | 6 | CH_obr_62 | 4 | 4 | 0.000000000000639464 |
| Oryza sativa ssp. indica | Chr12 | 6 | CH_osaindica_453 | 2 | 2 | 0.0000516609 |
| Oryza sativa Kitaake | Chr12 | 6 | CH_osak_276 | 3 | 4 | 0.0000000190085 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_227 | 3 | 5 | 0.0000000418359 |
| Oropetium thomaeum | Chromosome_10 | 6 | CH_oth_33 | 5 | 18 | 0.00000000000989369 |
| Phyllostachys edulis | hic_scaffold_11 | 6 | CH_ped_858 | 2 | 2 | 0.000611185 |
| Phyllostachys edulis | hic_scaffold_12 | 6 | CH_ped_859 | 2 | 2 | 0.000611185 |
| Panicum hallii | Chr03 | 6 | CH_pha_175 | 4 | 17 | 0.00000000140069 |
| Populus trichocarpa | Chr08 | 6 | CH_ptr_531 | 2 | 2 | 0.0000578001 |
| Sorghum bicolor | Chr08 | 6 | CH_sbi_465 | 3 | 18 | 0.0000168394 |
| Secale cereale | GWHASIY00000005 | 6 | CH_sce_1208 | 2 | 2 | 0.00045529 |
| Setaria italica | scaffold_3 | 6 | CH_sit_233 | 4 | 16 | 0.00000000533563 |
| Saccharum spontaneum | Chr2A | 6 | CH_ssp_2120 | 2 | 2 | 0.000858922 |
| Saccharum spontaneum | Chr2D | 6 | CH_ssp_2121 | 2 | 2 | 0.000858922 |
| Setaria viridis | Chr_03 | 6 | CH_svi_135 | 5 | 17 | 0.00000000000206322 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00038.1 | 6 | CH_zjn_123 | 4 | 33 | 0.000000217167 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |