Functional clusters
Information
- Type InterPro
- Description P-loop containing nucleoside triphosphate hydrolase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 2D | 5 | CH_ata_418 | 16 | 58 | 0.0000251027 |
| Cenchrus purpureus | GWHAORA00000014 | 5 | CH_cpu_1349 | 18 | 61 | 0.000156179 |
| Cenchrus purpureus | GWHAORA00000003 | 5 | CH_cpu_956 | 8 | 8 | 0.00000505515 |
| Cenchrus purpureus | GWHAORA00000003 | 5 | CH_cpu_96 | 19 | 19 | 6.22617e-20 |
| Digitaria exilis | Dexi_CM05836_chr01B | 5 | CH_dex_1146 | 9 | 17 | 0.000200339 |
| Eragrostis curvula | Contig34 | 5 | CH_ecu_1051 | 11 | 25 | 0.000036632 |
| Eragrostis curvula | 5 | 5 | CH_ecu_1167 | 8 | 12 | 0.000104183 |
| Eragrostis curvula | 1 | 5 | CH_ecu_1268 | 7 | 9 | 0.000212274 |
| Eragrostis curvula | 2 | 5 | CH_ecu_1392 | 17 | 80 | 0.00042481 |
| Eragrostis curvula | 4 | 5 | CH_ecu_1435 | 8 | 14 | 0.000589826 |
| Eragrostis curvula | 4 | 5 | CH_ecu_237 | 23 | 51 | 0.00000000000000886294 |
| Eragrostis curvula | Contig4 | 5 | CH_ecu_413 | 11 | 12 | 0.000000000156699 |
| Miscanthus sinensis | Chr18 | 5 | CH_msi_1188 | 7 | 10 | 0.000977372 |
| Miscanthus sinensis | Chr04 | 5 | CH_msi_456 | 13 | 28 | 0.000000708611 |
| Oryza alta | GWHAZTO00000019 | 5 | CH_oal_143 | 12 | 13 | 0.0000000000000960406 |
| Oryza sativa ssp. indica | Chr7 | 5 | CH_osaindica_254 | 8 | 8 | 0.0000001079 |
| Oryza sativa ssp. indica | Chr11 | 5 | CH_osaindica_503 | 9 | 17 | 0.0000723292 |
| Oryza sativa ssp. indica | Chr10 | 5 | CH_osaindica_533 | 11 | 30 | 0.000143783 |
| Oryza sativa Kitaake | Chr11 | 5 | CH_osak_574 | 7 | 8 | 0.0000497237 |
| Oryza sativa Kitaake | Chr10 | 5 | CH_osak_89 | 18 | 25 | 0.00000000000000108695 |
| Phyllostachys edulis | hic_scaffold_7 | 5 | CH_ped_496 | 20 | 75 | 0.00000999495 |
| Sorghum bicolor | Chr02 | 5 | CH_sbi_566 | 6 | 6 | 0.0000896646 |
| Secale cereale | GWHASIY00000006 | 5 | CH_sce_715 | 13 | 32 | 0.0000164112 |
| Secale cereale | GWHASIY00000001 | 5 | CH_sce_716 | 13 | 32 | 0.0000164112 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1375 | 21 | 64 | 0.000003287 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_385 | 22 | 35 | 0.000000000000041434 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_738 | 16 | 25 | 0.00000000154898 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_871 | 25 | 71 | 0.00000000851773 |
| Setaria italica | scaffold_2 | 5 | CH_sit_107 | 25 | 59 | 0.0000000000000137574 |
| Setaria italica | scaffold_9 | 5 | CH_sit_715 | 6 | 6 | 0.000213372 |
| Solanum lycopersicum | SL4.0ch08 | 5 | CH_sly_100 | 26 | 68 | 0.00000000000000789826 |
| Selaginella moellendorffii | scaffold_141 | 5 | CH_smo_130 | 9 | 12 | 0.00000274804 |
| Setaria viridis | Chr_09 | 5 | CH_svi_473 | 8 | 10 | 0.0000049045 |
| Setaria viridis | Chr_02 | 5 | CH_svi_90 | 25 | 61 | 8.3774e-16 |
| Triticum aestivum | Chr1B | 5 | CH_tae_2007 | 7 | 7 | 0.0000832433 |
| Triticum aestivum | Chr2A | 5 | CH_tae_271 | 28 | 57 | 1.34562e-16 |
| Triticum aestivum | Chr2B | 5 | CH_tae_723 | 22 | 56 | 0.00000000100018 |
| Triticum dicoccoides | 2B | 5 | CH_tdi_1083 | 15 | 49 | 0.000309556 |
| Triticum dicoccoides | 1B | 5 | CH_tdi_722 | 12 | 24 | 0.0000136824 |
| Triticum turgidum | chr2A | 5 | CH_ttu_603 | 17 | 44 | 0.000000755788 |
| Triticum turgidum | chr1B | 5 | CH_ttu_828 | 11 | 19 | 0.00001443 |
| Vanilla planifolia | CM028162.1 | 5 | CH_vpl_583 | 11 | 35 | 0.000406575 |
| Zostera marina | Chr04 | 5 | CH_zosmarina_262 | 15 | 63 | 0.000540407 |
| Aegilops tauschii | 2D | 6 | CH_ata_418 | 16 | 58 | 0.0000251027 |
| Cenchrus purpureus | GWHAORA00000014 | 6 | CH_cpu_1349 | 18 | 61 | 0.000156179 |
| Cenchrus purpureus | GWHAORA00000003 | 6 | CH_cpu_956 | 8 | 8 | 0.00000505515 |
| Cenchrus purpureus | GWHAORA00000003 | 6 | CH_cpu_96 | 19 | 19 | 6.22617e-20 |
| Digitaria exilis | Dexi_CM05836_chr01B | 6 | CH_dex_1146 | 9 | 17 | 0.000200339 |
| Eragrostis curvula | Contig34 | 6 | CH_ecu_1051 | 11 | 25 | 0.000036632 |
| Eragrostis curvula | 5 | 6 | CH_ecu_1167 | 8 | 12 | 0.000104183 |
| Eragrostis curvula | 1 | 6 | CH_ecu_1268 | 7 | 9 | 0.000212274 |
| Eragrostis curvula | 2 | 6 | CH_ecu_1392 | 17 | 80 | 0.00042481 |
| Eragrostis curvula | 4 | 6 | CH_ecu_1435 | 8 | 14 | 0.000589826 |
| Eragrostis curvula | 4 | 6 | CH_ecu_237 | 23 | 51 | 0.00000000000000886294 |
| Eragrostis curvula | Contig4 | 6 | CH_ecu_413 | 11 | 12 | 0.000000000156699 |
| Miscanthus sinensis | Chr18 | 6 | CH_msi_1188 | 7 | 10 | 0.000977372 |
| Miscanthus sinensis | Chr04 | 6 | CH_msi_456 | 13 | 28 | 0.000000708611 |
| Oryza alta | GWHAZTO00000019 | 6 | CH_oal_143 | 12 | 13 | 0.0000000000000960406 |
| Oryza sativa ssp. indica | Chr7 | 6 | CH_osaindica_254 | 8 | 8 | 0.0000001079 |
| Oryza sativa ssp. indica | Chr11 | 6 | CH_osaindica_503 | 9 | 17 | 0.0000723292 |
| Oryza sativa ssp. indica | Chr10 | 6 | CH_osaindica_533 | 11 | 30 | 0.000143783 |
| Oryza sativa Kitaake | Chr11 | 6 | CH_osak_574 | 7 | 8 | 0.0000497237 |
| Oryza sativa Kitaake | Chr10 | 6 | CH_osak_89 | 18 | 25 | 0.00000000000000108695 |
| Phyllostachys edulis | hic_scaffold_7 | 6 | CH_ped_496 | 20 | 75 | 0.00000999495 |
| Sorghum bicolor | Chr02 | 6 | CH_sbi_566 | 6 | 6 | 0.0000896646 |
| Secale cereale | GWHASIY00000006 | 6 | CH_sce_715 | 13 | 32 | 0.0000164112 |
| Secale cereale | GWHASIY00000001 | 6 | CH_sce_716 | 13 | 32 | 0.0000164112 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1375 | 21 | 64 | 0.000003287 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_385 | 22 | 35 | 0.000000000000041434 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_738 | 16 | 25 | 0.00000000154898 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_871 | 25 | 71 | 0.00000000851773 |
| Setaria italica | scaffold_2 | 6 | CH_sit_107 | 25 | 59 | 0.0000000000000137574 |
| Setaria italica | scaffold_9 | 6 | CH_sit_715 | 6 | 6 | 0.000213372 |
| Solanum lycopersicum | SL4.0ch08 | 6 | CH_sly_100 | 26 | 68 | 0.00000000000000789826 |
| Selaginella moellendorffii | scaffold_141 | 6 | CH_smo_130 | 9 | 12 | 0.00000274804 |
| Setaria viridis | Chr_09 | 6 | CH_svi_473 | 8 | 10 | 0.0000049045 |
| Setaria viridis | Chr_02 | 6 | CH_svi_90 | 25 | 61 | 8.3774e-16 |
| Triticum aestivum | Chr1B | 6 | CH_tae_2007 | 7 | 7 | 0.0000832433 |
| Triticum aestivum | Chr2A | 6 | CH_tae_271 | 28 | 57 | 1.34562e-16 |
| Triticum aestivum | Chr2B | 6 | CH_tae_723 | 22 | 56 | 0.00000000100018 |
| Triticum dicoccoides | 2B | 6 | CH_tdi_1083 | 15 | 49 | 0.000309556 |
| Triticum dicoccoides | 1B | 6 | CH_tdi_722 | 12 | 24 | 0.0000136824 |
| Triticum turgidum | chr2A | 6 | CH_ttu_603 | 17 | 44 | 0.000000755788 |
| Triticum turgidum | chr1B | 6 | CH_ttu_828 | 11 | 19 | 0.00001443 |
| Vanilla planifolia | CM028162.1 | 6 | CH_vpl_583 | 11 | 35 | 0.000406575 |
| Zostera marina | Chr04 | 6 | CH_zosmarina_262 | 15 | 63 | 0.000540407 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |