Functional clusters
Information
- Type InterPro
- Description ABC transporter A
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG01 | 5 | CH_aco_251 | 2 | 2 | 0.000497678 |
| Asparagus officinalis | AsparagusV1_08 | 5 | CH_aof_357 | 2 | 2 | 0.000453549 |
| Allium sativum | chr6 | 5 | CH_asa_1414 | 2 | 2 | 0.000581305 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_138 | 4 | 7 | 0.00000000122183 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_25 | 7 | 12 | 2.73087e-20 |
| Amborella trichopoda | AmTr_v1.0_scaffold00078 | 5 | CH_atr_98 | 4 | 5 | 0.0000000000376021 |
| Brachypodium distachyon | Bd3 | 5 | CH_bdi_220 | 3 | 4 | 0.000000456314 |
| Calamus simplicifolius | scaffold118 | 5 | CH_calsi_429 | 2 | 3 | 0.00020139 |
| Ceratophyllum demersum | 3 | 5 | CH_cde_98 | 3 | 3 | 0.000000327496 |
| Cenchrus purpureus | GWHAORA00000004 | 5 | CH_cpu_801 | 3 | 3 | 0.00000080277 |
| Cenchrus purpureus | GWHAORA00000013 | 5 | CH_cpu_802 | 3 | 3 | 0.00000080277 |
| Cenchrus purpureus | GWHAORA00000001 | 5 | CH_cpu_916 | 3 | 4 | 0.00000321055 |
| Dioscorea dumetorum | contig567 | 5 | CH_ddu_175 | 3 | 3 | 0.000000859232 |
| Digitaria exilis | Dexi_CM05836_chr06B | 5 | CH_dex_137 | 6 | 8 | 0.0000000000000026505 |
| Digitaria exilis | Dexi_CM05836_chr06A | 5 | CH_dex_138 | 6 | 8 | 0.0000000000000026505 |
| Digitaria exilis | Dexi_CM05836_chr01B | 5 | CH_dex_396 | 4 | 5 | 0.00000000495692 |
| Eragrostis curvula | Contig50 | 5 | CH_ecu_432 | 6 | 72 | 0.000000000282461 |
| Elaeis guineensis | EG5.1_Chr1 | 5 | CH_egu_477 | 2 | 2 | 0.000568397 |
| Hordeum vulgare | chr1H | 5 | CH_hvu_287 | 3 | 3 | 0.0000000864707 |
| Lolium perenne | Lp_chr7_0.1 | 5 | CH_lpe_221 | 3 | 3 | 0.0000000309946 |
| Musa acuminata | chrUn_random | 5 | CH_mac_196 | 3 | 5 | 0.000010649 |
| Musa acuminata | chr03 | 5 | CH_mac_46 | 5 | 6 | 0.00000000000037143 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_103 | 5 | 6 | 0.00000000000000525774 |
| Miscanthus sinensis | Chr07 | 5 | CH_msi_205 | 4 | 4 | 0.000000000306468 |
| Miscanthus sinensis | Chr13 | 5 | CH_msi_352 | 4 | 10 | 0.0000000642825 |
| Miscanthus sinensis | Chr08 | 5 | CH_msi_547 | 3 | 4 | 0.00000507509 |
| Miscanthus sinensis | Chr07 | 5 | CH_msi_548 | 3 | 4 | 0.00000507509 |
| Oryza alta | GWHAZTO00000020 | 5 | CH_oal_578 | 3 | 3 | 0.000000341108 |
| Oryza alta | GWHAZTO00000008 | 5 | CH_oal_679 | 3 | 4 | 0.00000136428 |
| Oryza brachyantha | 8 | 5 | CH_obr_177 | 3 | 3 | 0.0000000535231 |
| Oryza sativa ssp. indica | Chr8 | 5 | CH_osaindica_262 | 3 | 3 | 0.000000140118 |
| Oryza sativa Kitaake | Chr8 | 5 | CH_osak_334 | 3 | 3 | 0.0000000950451 |
| Oryza sativa ssp. japonica | chr08 | 5 | CH_osa_269 | 3 | 3 | 0.000000146433 |
| Oropetium thomaeum | Chromosome_9 | 5 | CH_oth_64 | 4 | 8 | 0.00000000265021 |
| Phyllostachys edulis | hic_scaffold_22 | 5 | CH_ped_441 | 3 | 3 | 0.00000331218 |
| Panicum hallii | Chr01 | 5 | CH_pha_296 | 3 | 3 | 0.000000425498 |
| Panicum hallii | Chr06 | 5 | CH_pha_442 | 3 | 8 | 0.0000238088 |
| Populus trichocarpa | Chr12 | 5 | CH_ptr_802 | 2 | 2 | 0.000867002 |
| Populus trichocarpa | Chr15 | 5 | CH_ptr_803 | 2 | 2 | 0.000867002 |
| Sorghum bicolor | Chr07 | 5 | CH_sbi_175 | 4 | 6 | 0.000000000381632 |
| Sorghum bicolor | Chr04 | 5 | CH_sbi_337 | 3 | 3 | 0.0000004337 |
| Secale cereale | GWHASIY00000001 | 5 | CH_sce_320 | 4 | 7 | 0.00000000991406 |
| Secale cereale | GWHASIY00000001 | 5 | CH_sce_516 | 3 | 3 | 0.00000113183 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_159 | 7 | 8 | 6.73834e-23 |
| Setaria italica | scaffold_1 | 5 | CH_sit_362 | 3 | 3 | 0.000000283007 |
| Setaria italica | scaffold_6 | 5 | CH_sit_493 | 3 | 7 | 0.00000989978 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_105 | 5 | 5 | 0.0000000000000112172 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_407 | 3 | 4 | 0.00000173605 |
| Selaginella moellendorffii | scaffold_13 | 5 | CH_smo_166 | 3 | 6 | 0.0000146373 |
| Spirodela polyrhiza | pseudo3 | 5 | CH_spo_392 | 2 | 2 | 0.000611527 |
| Spirodela polyrhiza | pseudo0 | 5 | CH_spo_393 | 2 | 2 | 0.000611527 |
| Saccharum spontaneum | Chr6C | 5 | CH_ssp_269 | 4 | 4 | 0.000000000432973 |
| Saccharum spontaneum | Chr4B | 5 | CH_ssp_759 | 3 | 3 | 0.00000172826 |
| Saccharum spontaneum | Chr6D | 5 | CH_ssp_934 | 3 | 4 | 0.00000691166 |
| Saccharum spontaneum | Chr4C | 5 | CH_ssp_935 | 3 | 4 | 0.00000691166 |
| Setaria viridis | Chr_01 | 5 | CH_svi_356 | 3 | 3 | 0.000000228704 |
| Setaria viridis | Chr_06 | 5 | CH_svi_487 | 3 | 7 | 0.00000800066 |
| Triticum aestivum | Chr1D | 5 | CH_tae_1292 | 3 | 3 | 0.000000698132 |
| Triticum aestivum | Chr1B | 5 | CH_tae_1293 | 3 | 3 | 0.000000698132 |
| Triticum aestivum | Chr1A | 5 | CH_tae_1482 | 3 | 4 | 0.00000279215 |
| Triticum dicoccoides | 1B | 5 | CH_tdi_531 | 3 | 3 | 0.00000107861 |
| Triticum dicoccoides | 1A | 5 | CH_tdi_616 | 3 | 4 | 0.00000431364 |
| Triticum turgidum | chr1A | 5 | CH_ttu_558 | 3 | 3 | 0.000000419044 |
| Triticum turgidum | chr1B | 5 | CH_ttu_559 | 3 | 3 | 0.000000419044 |
| Vanilla planifolia | CM028159.1 | 5 | CH_vpl_64 | 4 | 7 | 0.000000000211759 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00015.1 | 5 | CH_zjn_48 | 4 | 7 | 0.00000000037209 |
| Zostera marina | Chr05 | 5 | CH_zosmarina_125 | 3 | 5 | 0.0000117418 |
| Ananas comosus | LG01 | 6 | CH_aco_251 | 2 | 2 | 0.000497678 |
| Asparagus officinalis | AsparagusV1_08 | 6 | CH_aof_357 | 2 | 2 | 0.000453549 |
| Allium sativum | chr6 | 6 | CH_asa_1414 | 2 | 2 | 0.000581305 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_138 | 4 | 7 | 0.00000000122183 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_25 | 7 | 12 | 2.73087e-20 |
| Amborella trichopoda | AmTr_v1.0_scaffold00078 | 6 | CH_atr_98 | 4 | 5 | 0.0000000000376021 |
| Brachypodium distachyon | Bd3 | 6 | CH_bdi_220 | 3 | 4 | 0.000000456314 |
| Calamus simplicifolius | scaffold118 | 6 | CH_calsi_429 | 2 | 3 | 0.00020139 |
| Ceratophyllum demersum | 3 | 6 | CH_cde_98 | 3 | 3 | 0.000000327496 |
| Cenchrus purpureus | GWHAORA00000004 | 6 | CH_cpu_801 | 3 | 3 | 0.00000080277 |
| Cenchrus purpureus | GWHAORA00000013 | 6 | CH_cpu_802 | 3 | 3 | 0.00000080277 |
| Cenchrus purpureus | GWHAORA00000001 | 6 | CH_cpu_916 | 3 | 4 | 0.00000321055 |
| Dioscorea dumetorum | contig567 | 6 | CH_ddu_175 | 3 | 3 | 0.000000859232 |
| Digitaria exilis | Dexi_CM05836_chr06B | 6 | CH_dex_137 | 6 | 8 | 0.0000000000000026505 |
| Digitaria exilis | Dexi_CM05836_chr06A | 6 | CH_dex_138 | 6 | 8 | 0.0000000000000026505 |
| Digitaria exilis | Dexi_CM05836_chr01B | 6 | CH_dex_396 | 4 | 5 | 0.00000000495692 |
| Eragrostis curvula | Contig50 | 6 | CH_ecu_432 | 6 | 72 | 0.000000000282461 |
| Elaeis guineensis | EG5.1_Chr1 | 6 | CH_egu_477 | 2 | 2 | 0.000568397 |
| Hordeum vulgare | chr1H | 6 | CH_hvu_287 | 3 | 3 | 0.0000000864707 |
| Lolium perenne | Lp_chr7_0.1 | 6 | CH_lpe_221 | 3 | 3 | 0.0000000309946 |
| Musa acuminata | chrUn_random | 6 | CH_mac_196 | 3 | 5 | 0.000010649 |
| Musa acuminata | chr03 | 6 | CH_mac_46 | 5 | 6 | 0.00000000000037143 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_103 | 5 | 6 | 0.00000000000000525774 |
| Miscanthus sinensis | Chr07 | 6 | CH_msi_205 | 4 | 4 | 0.000000000306468 |
| Miscanthus sinensis | Chr13 | 6 | CH_msi_352 | 4 | 10 | 0.0000000642825 |
| Miscanthus sinensis | Chr08 | 6 | CH_msi_547 | 3 | 4 | 0.00000507509 |
| Miscanthus sinensis | Chr07 | 6 | CH_msi_548 | 3 | 4 | 0.00000507509 |
| Oryza alta | GWHAZTO00000020 | 6 | CH_oal_578 | 3 | 3 | 0.000000341108 |
| Oryza alta | GWHAZTO00000008 | 6 | CH_oal_679 | 3 | 4 | 0.00000136428 |
| Oryza brachyantha | 8 | 6 | CH_obr_177 | 3 | 3 | 0.0000000535231 |
| Oryza sativa ssp. indica | Chr8 | 6 | CH_osaindica_262 | 3 | 3 | 0.000000140118 |
| Oryza sativa Kitaake | Chr8 | 6 | CH_osak_334 | 3 | 3 | 0.0000000950451 |
| Oryza sativa ssp. japonica | chr08 | 6 | CH_osa_269 | 3 | 3 | 0.000000146433 |
| Oropetium thomaeum | Chromosome_9 | 6 | CH_oth_64 | 4 | 8 | 0.00000000265021 |
| Phyllostachys edulis | hic_scaffold_22 | 6 | CH_ped_441 | 3 | 3 | 0.00000331218 |
| Panicum hallii | Chr01 | 6 | CH_pha_296 | 3 | 3 | 0.000000425498 |
| Panicum hallii | Chr06 | 6 | CH_pha_442 | 3 | 8 | 0.0000238088 |
| Populus trichocarpa | Chr12 | 6 | CH_ptr_802 | 2 | 2 | 0.000867002 |
| Populus trichocarpa | Chr15 | 6 | CH_ptr_803 | 2 | 2 | 0.000867002 |
| Sorghum bicolor | Chr07 | 6 | CH_sbi_175 | 4 | 6 | 0.000000000381632 |
| Sorghum bicolor | Chr04 | 6 | CH_sbi_337 | 3 | 3 | 0.0000004337 |
| Secale cereale | GWHASIY00000001 | 6 | CH_sce_320 | 4 | 7 | 0.00000000991406 |
| Secale cereale | GWHASIY00000001 | 6 | CH_sce_516 | 3 | 3 | 0.00000113183 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_159 | 7 | 8 | 6.73834e-23 |
| Setaria italica | scaffold_1 | 6 | CH_sit_362 | 3 | 3 | 0.000000283007 |
| Setaria italica | scaffold_6 | 6 | CH_sit_493 | 3 | 7 | 0.00000989978 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_105 | 5 | 5 | 0.0000000000000112172 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_407 | 3 | 4 | 0.00000173605 |
| Selaginella moellendorffii | scaffold_13 | 6 | CH_smo_166 | 3 | 6 | 0.0000146373 |
| Spirodela polyrhiza | pseudo3 | 6 | CH_spo_392 | 2 | 2 | 0.000611527 |
| Spirodela polyrhiza | pseudo0 | 6 | CH_spo_393 | 2 | 2 | 0.000611527 |
| Saccharum spontaneum | Chr6C | 6 | CH_ssp_269 | 4 | 4 | 0.000000000432973 |
| Saccharum spontaneum | Chr4B | 6 | CH_ssp_759 | 3 | 3 | 0.00000172826 |
| Saccharum spontaneum | Chr6D | 6 | CH_ssp_934 | 3 | 4 | 0.00000691166 |
| Saccharum spontaneum | Chr4C | 6 | CH_ssp_935 | 3 | 4 | 0.00000691166 |
| Setaria viridis | Chr_01 | 6 | CH_svi_356 | 3 | 3 | 0.000000228704 |
| Setaria viridis | Chr_06 | 6 | CH_svi_487 | 3 | 7 | 0.00000800066 |
| Triticum aestivum | Chr1D | 6 | CH_tae_1292 | 3 | 3 | 0.000000698132 |
| Triticum aestivum | Chr1B | 6 | CH_tae_1293 | 3 | 3 | 0.000000698132 |
| Triticum aestivum | Chr1A | 6 | CH_tae_1482 | 3 | 4 | 0.00000279215 |
| Triticum dicoccoides | 1B | 6 | CH_tdi_531 | 3 | 3 | 0.00000107861 |
| Triticum dicoccoides | 1A | 6 | CH_tdi_616 | 3 | 4 | 0.00000431364 |
| Triticum turgidum | chr1A | 6 | CH_ttu_558 | 3 | 3 | 0.000000419044 |
| Triticum turgidum | chr1B | 6 | CH_ttu_559 | 3 | 3 | 0.000000419044 |
| Vanilla planifolia | CM028159.1 | 6 | CH_vpl_64 | 4 | 7 | 0.000000000211759 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00015.1 | 6 | CH_zjn_48 | 4 | 7 | 0.00000000037209 |
| Zostera marina | Chr05 | 6 | CH_zosmarina_125 | 3 | 5 | 0.0000117418 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |