Functional clusters
Information
- Type InterPro
- Description Protein of unknown function DUF3339
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG21 | 5 | CH_aco_84 | 3 | 4 | 0.00000144464 |
| Allium sativum | chr7_1 | 5 | CH_asa_1316 | 2 | 2 | 0.000387537 |
| Aegilops tauschii | 1D | 5 | CH_ata_402 | 3 | 5 | 0.0000165411 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_246 | 3 | 3 | 0.000000352118 |
| Brachypodium distachyon | Bd3 | 5 | CH_bdi_234 | 3 | 3 | 0.000000684539 |
| Calamus simplicifolius | scaffold619 | 5 | CH_calsi_150 | 3 | 3 | 0.000000135206 |
| Cenchrus purpureus | GWHAORA00000007 | 5 | CH_cpu_822 | 3 | 3 | 0.000000974792 |
| Dioscorea dumetorum | contig570 | 5 | CH_ddu_417 | 2 | 2 | 0.000414536 |
| Digitaria exilis | Dexi_CM05836_chr05B | 5 | CH_dex_627 | 3 | 3 | 0.000000479163 |
| Digitaria exilis | Dexi_CM05836_chr05A | 5 | CH_dex_711 | 3 | 4 | 0.00000191638 |
| Eragrostis curvula | Contig30 | 5 | CH_ecu_1240 | 3 | 11 | 0.000169032 |
| Eragrostis curvula | Contig887 | 5 | CH_ecu_788 | 3 | 3 | 0.00000102602 |
| Eragrostis curvula | Contig25 | 5 | CH_ecu_887 | 3 | 4 | 0.0000041033 |
| Glycine max | Gm16 | 5 | CH_gma_105 | 5 | 5 | 0.000000000000661681 |
| Glycine max | Gm19 | 5 | CH_gma_120 | 5 | 6 | 0.00000000000396882 |
| Magnolia biondii | Chr11 | 5 | CH_mbi_375 | 3 | 4 | 0.0000000566069 |
| Miscanthus sinensis | Chr05 | 5 | CH_msi_539 | 3 | 4 | 0.00000422929 |
| Oryza alta | GWHAZTO00000014 | 5 | CH_oal_614 | 3 | 4 | 0.000000535984 |
| Oryza sativa Kitaake | Chr2 | 5 | CH_osak_403 | 3 | 3 | 0.0000010455 |
| Oryza sativa ssp. japonica | chr02 | 5 | CH_osa_394 | 3 | 5 | 0.00000920062 |
| Oropetium thomaeum | Chromosome_6 | 5 | CH_oth_180 | 3 | 5 | 0.00000911729 |
| Panicum hallii | Chr05 | 5 | CH_pha_383 | 3 | 4 | 0.00000579344 |
| Populus trichocarpa | Chr17 | 5 | CH_ptr_122 | 5 | 5 | 0.000000000000251424 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_415 | 3 | 3 | 0.0000022802 |
| Sorghum bicolor | Chr03 | 5 | CH_sbi_425 | 3 | 4 | 0.00000454249 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_2620 | 2 | 4 | 0.000876801 |
| Setaria italica | scaffold_5 | 5 | CH_sit_414 | 3 | 3 | 0.00000144536 |
| Spirodela polyrhiza | pseudo13 | 5 | CH_spo_134 | 3 | 3 | 0.000000545394 |
| Spirodela polyrhiza | pseudo4 | 5 | CH_spo_135 | 3 | 3 | 0.000000545394 |
| Saccharum spontaneum | Chr7D | 5 | CH_ssp_413 | 4 | 7 | 0.0000000213064 |
| Saccharum spontaneum | Chr7B | 5 | CH_ssp_644 | 4 | 14 | 0.000000608418 |
| Saccharum spontaneum | Chr3A | 5 | CH_ssp_784 | 3 | 3 | 0.0000022201 |
| Saccharum spontaneum | Chr3B | 5 | CH_ssp_785 | 3 | 3 | 0.0000022201 |
| Setaria viridis | Chr_05 | 5 | CH_svi_469 | 3 | 4 | 0.00000467105 |
| Triticum aestivum | Chr1D | 5 | CH_tae_2114 | 3 | 6 | 0.000138915 |
| Vanilla planifolia | CM028163.1 | 5 | CH_vpl_102 | 4 | 12 | 0.00000000897953 |
| Zostera marina | Chr05 | 5 | CH_zosmarina_90 | 3 | 5 | 0.00000139824 |
| Ananas comosus | LG21 | 6 | CH_aco_84 | 3 | 4 | 0.00000144464 |
| Allium sativum | chr7_1 | 6 | CH_asa_1316 | 2 | 2 | 0.000387537 |
| Aegilops tauschii | 1D | 6 | CH_ata_402 | 3 | 5 | 0.0000165411 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_246 | 3 | 3 | 0.000000352118 |
| Brachypodium distachyon | Bd3 | 6 | CH_bdi_234 | 3 | 3 | 0.000000684539 |
| Calamus simplicifolius | scaffold619 | 6 | CH_calsi_150 | 3 | 3 | 0.000000135206 |
| Cenchrus purpureus | GWHAORA00000007 | 6 | CH_cpu_822 | 3 | 3 | 0.000000974792 |
| Dioscorea dumetorum | contig570 | 6 | CH_ddu_417 | 2 | 2 | 0.000414536 |
| Digitaria exilis | Dexi_CM05836_chr05B | 6 | CH_dex_627 | 3 | 3 | 0.000000479163 |
| Digitaria exilis | Dexi_CM05836_chr05A | 6 | CH_dex_711 | 3 | 4 | 0.00000191638 |
| Eragrostis curvula | Contig30 | 6 | CH_ecu_1240 | 3 | 11 | 0.000169032 |
| Eragrostis curvula | Contig887 | 6 | CH_ecu_788 | 3 | 3 | 0.00000102602 |
| Eragrostis curvula | Contig25 | 6 | CH_ecu_887 | 3 | 4 | 0.0000041033 |
| Glycine max | Gm16 | 6 | CH_gma_105 | 5 | 5 | 0.000000000000661681 |
| Glycine max | Gm19 | 6 | CH_gma_120 | 5 | 6 | 0.00000000000396882 |
| Magnolia biondii | Chr11 | 6 | CH_mbi_375 | 3 | 4 | 0.0000000566069 |
| Miscanthus sinensis | Chr05 | 6 | CH_msi_539 | 3 | 4 | 0.00000422929 |
| Oryza alta | GWHAZTO00000014 | 6 | CH_oal_614 | 3 | 4 | 0.000000535984 |
| Oryza sativa Kitaake | Chr2 | 6 | CH_osak_403 | 3 | 3 | 0.0000010455 |
| Oryza sativa ssp. japonica | chr02 | 6 | CH_osa_394 | 3 | 5 | 0.00000920062 |
| Oropetium thomaeum | Chromosome_6 | 6 | CH_oth_180 | 3 | 5 | 0.00000911729 |
| Panicum hallii | Chr05 | 6 | CH_pha_383 | 3 | 4 | 0.00000579344 |
| Populus trichocarpa | Chr17 | 6 | CH_ptr_122 | 5 | 5 | 0.000000000000251424 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_415 | 3 | 3 | 0.0000022802 |
| Sorghum bicolor | Chr03 | 6 | CH_sbi_425 | 3 | 4 | 0.00000454249 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_2620 | 2 | 4 | 0.000876801 |
| Setaria italica | scaffold_5 | 6 | CH_sit_414 | 3 | 3 | 0.00000144536 |
| Spirodela polyrhiza | pseudo13 | 6 | CH_spo_134 | 3 | 3 | 0.000000545394 |
| Spirodela polyrhiza | pseudo4 | 6 | CH_spo_135 | 3 | 3 | 0.000000545394 |
| Saccharum spontaneum | Chr7D | 6 | CH_ssp_413 | 4 | 7 | 0.0000000213064 |
| Saccharum spontaneum | Chr7B | 6 | CH_ssp_644 | 4 | 14 | 0.000000608418 |
| Saccharum spontaneum | Chr3A | 6 | CH_ssp_784 | 3 | 3 | 0.0000022201 |
| Saccharum spontaneum | Chr3B | 6 | CH_ssp_785 | 3 | 3 | 0.0000022201 |
| Setaria viridis | Chr_05 | 6 | CH_svi_469 | 3 | 4 | 0.00000467105 |
| Triticum aestivum | Chr1D | 6 | CH_tae_2114 | 3 | 6 | 0.000138915 |
| Vanilla planifolia | CM028163.1 | 6 | CH_vpl_102 | 4 | 12 | 0.00000000897953 |
| Zostera marina | Chr05 | 6 | CH_zosmarina_90 | 3 | 5 | 0.00000139824 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |