Functional clusters
Information
- Type InterPro
- Description Chalcone/stilbene synthase, N-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 5 | CH_aag_116 | 3 | 4 | 0.000000772869 |
| Calamus simplicifolius | scaffold229 | 5 | CH_calsi_28 | 7 | 14 | 0.0000000000000828626 |
| Ceratophyllum demersum | 11 | 5 | CH_cde_145 | 3 | 4 | 0.00000449027 |
| Cenchrus purpureus | GWHAORA00000010 | 5 | CH_cpu_600 | 4 | 4 | 0.0000000563158 |
| Dioscorea dumetorum | contig554 | 5 | CH_ddu_9 | 12 | 19 | 1.74107e-28 |
| Digitaria exilis | Dexi_CM05836_chr08B | 5 | CH_dex_171 | 7 | 12 | 0.0000000000000377699 |
| Digitaria exilis | Dexi_CM05836_chr08A | 5 | CH_dex_318 | 5 | 6 | 0.000000000333735 |
| Eragrostis curvula | 5 | 5 | CH_ecu_1469 | 3 | 4 | 0.000740239 |
| Eragrostis curvula | 6 | 5 | CH_ecu_948 | 4 | 7 | 0.00000964526 |
| Glycine max | Gm08 | 5 | CH_gma_15 | 12 | 20 | 4.48505e-33 |
| Lolium perenne | Lp_chr4_0 | 5 | CH_lpe_415 | 4 | 35 | 0.0000200886 |
| Musa acuminata | chr10 | 5 | CH_mac_52 | 5 | 5 | 0.00000000000121207 |
| Magnolia biondii | Chr11 | 5 | CH_mbi_269 | 4 | 7 | 0.00000000252497 |
| Miscanthus sinensis | Chr09 | 5 | CH_msi_156 | 5 | 6 | 0.0000000000182289 |
| Miscanthus sinensis | Chr10 | 5 | CH_msi_77 | 9 | 50 | 3.80065e-16 |
| Oryza alta | GWHAZTO00000013 | 5 | CH_oal_1127 | 3 | 5 | 0.0000648937 |
| Oryza brachyantha | 10 | 5 | CH_obr_142 | 6 | 57 | 0.0000000113337 |
| Oryza sativa ssp. indica | Chr5 | 5 | CH_osaindica_118 | 5 | 5 | 0.00000000000634495 |
| Oryza sativa ssp. indica | Chr11 | 5 | CH_osaindica_192 | 5 | 13 | 0.00000000500615 |
| Oryza sativa Kitaake | Chr5 | 5 | CH_osak_258 | 4 | 4 | 0.00000000799822 |
| Oryza sativa Kitaake | Chr11 | 5 | CH_osak_305 | 4 | 5 | 0.0000000399702 |
| Oryza sativa Kitaake | Chr10 | 5 | CH_osak_536 | 5 | 58 | 0.0000220747 |
| Oryza sativa Kitaake | Chr7 | 5 | CH_osak_643 | 3 | 5 | 0.000123432 |
| Oropetium thomaeum | Chromosome_7 | 5 | CH_oth_406 | 2 | 2 | 0.000711845 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_394 | 3 | 3 | 0.00000143327 |
| Sorghum bicolor | Chr02 | 5 | CH_sbi_491 | 3 | 3 | 0.0000368645 |
| Secale cereale | GWHASIY00000007 | 5 | CH_sce_165 | 8 | 49 | 0.00000000000429838 |
| Setaria italica | scaffold_8 | 5 | CH_sit_46 | 8 | 11 | 1.5423e-20 |
| Saccharum spontaneum | Chr6D | 5 | CH_ssp_121 | 8 | 25 | 0.0000000000000177416 |
| Saccharum spontaneum | Chr6A | 5 | CH_ssp_140 | 9 | 51 | 0.0000000000000681226 |
| Saccharum spontaneum | Chr6B | 5 | CH_ssp_292 | 5 | 7 | 0.00000000071317 |
| Saccharum spontaneum | Chr6B | 5 | CH_ssp_446 | 4 | 4 | 0.0000000419196 |
| Setaria viridis | Chr_02 | 5 | CH_svi_269 | 4 | 5 | 0.0000000188627 |
| Setaria viridis | Chr_08 | 5 | CH_svi_35 | 9 | 14 | 4.5476e-23 |
| Setaria viridis | Chr_07 | 5 | CH_svi_538 | 3 | 4 | 0.0000289189 |
| Triticum aestivum | Chr5A | 5 | CH_tae_1031 | 4 | 4 | 0.00000006524 |
| Triticum aestivum | Chr4B | 5 | CH_tae_1541 | 4 | 8 | 0.00000455407 |
| Triticum aestivum | Chr2A | 5 | CH_tae_1865 | 5 | 41 | 0.0000409972 |
| Triticum aestivum | Chr2D | 5 | CH_tae_1986 | 3 | 3 | 0.0000749994 |
| Triticum aestivum | Chr1B | 5 | CH_tae_532 | 6 | 11 | 0.0000000000219967 |
| Triticum aestivum | Chr4A | 5 | CH_tae_792 | 6 | 22 | 0.000000003524 |
| Triticum aestivum | Chr2B | 5 | CH_tae_996 | 5 | 12 | 0.0000000442404 |
| Triticum dicoccoides | 1B | 5 | CH_tdi_277 | 5 | 8 | 0.0000000011325 |
| Triticum turgidum | chr2A | 5 | CH_ttu_1238 | 5 | 68 | 0.00042345 |
| Triticum turgidum | chr2B | 5 | CH_ttu_286 | 6 | 15 | 0.000000000185222 |
| Triticum turgidum | chr4B | 5 | CH_ttu_438 | 5 | 12 | 0.0000000335434 |
| Triticum turgidum | chr1B | 5 | CH_ttu_756 | 4 | 9 | 0.0000060003 |
| Triticum turgidum | chr4A | 5 | CH_ttu_757 | 4 | 9 | 0.0000060003 |
| Vanilla planifolia | CM028161.1 | 5 | CH_vpl_38 | 5 | 5 | 0.000000000000287761 |
| Zea mays B73 | 3 | 5 | CH_zma_201 | 4 | 12 | 0.000000471394 |
| Zea mays B73 | 4 | 5 | CH_zma_234 | 3 | 3 | 0.00000266676 |
| Zea mays B73 | 4 | 5 | CH_zma_363 | 3 | 7 | 0.000093227 |
| Anthoceros agrestis | Sc2ySwM_117 | 6 | CH_aag_116 | 3 | 4 | 0.000000772869 |
| Calamus simplicifolius | scaffold229 | 6 | CH_calsi_28 | 7 | 14 | 0.0000000000000828626 |
| Ceratophyllum demersum | 11 | 6 | CH_cde_145 | 3 | 4 | 0.00000449027 |
| Cenchrus purpureus | GWHAORA00000010 | 6 | CH_cpu_600 | 4 | 4 | 0.0000000563158 |
| Dioscorea dumetorum | contig554 | 6 | CH_ddu_9 | 12 | 19 | 1.74107e-28 |
| Digitaria exilis | Dexi_CM05836_chr08B | 6 | CH_dex_171 | 7 | 12 | 0.0000000000000377699 |
| Digitaria exilis | Dexi_CM05836_chr08A | 6 | CH_dex_318 | 5 | 6 | 0.000000000333735 |
| Eragrostis curvula | 5 | 6 | CH_ecu_1469 | 3 | 4 | 0.000740239 |
| Eragrostis curvula | 6 | 6 | CH_ecu_948 | 4 | 7 | 0.00000964526 |
| Glycine max | Gm08 | 6 | CH_gma_15 | 12 | 20 | 4.48505e-33 |
| Lolium perenne | Lp_chr4_0 | 6 | CH_lpe_415 | 4 | 35 | 0.0000200886 |
| Musa acuminata | chr10 | 6 | CH_mac_52 | 5 | 5 | 0.00000000000121207 |
| Magnolia biondii | Chr11 | 6 | CH_mbi_269 | 4 | 7 | 0.00000000252497 |
| Miscanthus sinensis | Chr09 | 6 | CH_msi_156 | 5 | 6 | 0.0000000000182289 |
| Miscanthus sinensis | Chr10 | 6 | CH_msi_77 | 9 | 50 | 3.80065e-16 |
| Oryza alta | GWHAZTO00000013 | 6 | CH_oal_1127 | 3 | 5 | 0.0000648937 |
| Oryza brachyantha | 10 | 6 | CH_obr_142 | 6 | 57 | 0.0000000113337 |
| Oryza sativa ssp. indica | Chr5 | 6 | CH_osaindica_118 | 5 | 5 | 0.00000000000634495 |
| Oryza sativa ssp. indica | Chr11 | 6 | CH_osaindica_192 | 5 | 13 | 0.00000000500615 |
| Oryza sativa Kitaake | Chr5 | 6 | CH_osak_258 | 4 | 4 | 0.00000000799822 |
| Oryza sativa Kitaake | Chr11 | 6 | CH_osak_305 | 4 | 5 | 0.0000000399702 |
| Oryza sativa Kitaake | Chr10 | 6 | CH_osak_536 | 5 | 58 | 0.0000220747 |
| Oryza sativa Kitaake | Chr7 | 6 | CH_osak_643 | 3 | 5 | 0.000123432 |
| Oropetium thomaeum | Chromosome_7 | 6 | CH_oth_406 | 2 | 2 | 0.000711845 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_394 | 3 | 3 | 0.00000143327 |
| Sorghum bicolor | Chr02 | 6 | CH_sbi_491 | 3 | 3 | 0.0000368645 |
| Secale cereale | GWHASIY00000007 | 6 | CH_sce_165 | 8 | 49 | 0.00000000000429838 |
| Setaria italica | scaffold_8 | 6 | CH_sit_46 | 8 | 11 | 1.5423e-20 |
| Saccharum spontaneum | Chr6D | 6 | CH_ssp_121 | 8 | 25 | 0.0000000000000177416 |
| Saccharum spontaneum | Chr6A | 6 | CH_ssp_140 | 9 | 51 | 0.0000000000000681226 |
| Saccharum spontaneum | Chr6B | 6 | CH_ssp_292 | 5 | 7 | 0.00000000071317 |
| Saccharum spontaneum | Chr6B | 6 | CH_ssp_446 | 4 | 4 | 0.0000000419196 |
| Setaria viridis | Chr_02 | 6 | CH_svi_269 | 4 | 5 | 0.0000000188627 |
| Setaria viridis | Chr_08 | 6 | CH_svi_35 | 9 | 14 | 4.5476e-23 |
| Setaria viridis | Chr_07 | 6 | CH_svi_538 | 3 | 4 | 0.0000289189 |
| Triticum aestivum | Chr5A | 6 | CH_tae_1031 | 4 | 4 | 0.00000006524 |
| Triticum aestivum | Chr4B | 6 | CH_tae_1541 | 4 | 8 | 0.00000455407 |
| Triticum aestivum | Chr2A | 6 | CH_tae_1865 | 5 | 41 | 0.0000409972 |
| Triticum aestivum | Chr2D | 6 | CH_tae_1986 | 3 | 3 | 0.0000749994 |
| Triticum aestivum | Chr1B | 6 | CH_tae_532 | 6 | 11 | 0.0000000000219967 |
| Triticum aestivum | Chr4A | 6 | CH_tae_792 | 6 | 22 | 0.000000003524 |
| Triticum aestivum | Chr2B | 6 | CH_tae_996 | 5 | 12 | 0.0000000442404 |
| Triticum dicoccoides | 1B | 6 | CH_tdi_277 | 5 | 8 | 0.0000000011325 |
| Triticum turgidum | chr2A | 6 | CH_ttu_1238 | 5 | 68 | 0.00042345 |
| Triticum turgidum | chr2B | 6 | CH_ttu_286 | 6 | 15 | 0.000000000185222 |
| Triticum turgidum | chr4B | 6 | CH_ttu_438 | 5 | 12 | 0.0000000335434 |
| Triticum turgidum | chr1B | 6 | CH_ttu_756 | 4 | 9 | 0.0000060003 |
| Triticum turgidum | chr4A | 6 | CH_ttu_757 | 4 | 9 | 0.0000060003 |
| Vanilla planifolia | CM028161.1 | 6 | CH_vpl_38 | 5 | 5 | 0.000000000000287761 |
| Zea mays B73 | 3 | 6 | CH_zma_201 | 4 | 12 | 0.000000471394 |
| Zea mays B73 | 4 | 6 | CH_zma_234 | 3 | 3 | 0.00000266676 |
| Zea mays B73 | 4 | 6 | CH_zma_363 | 3 | 7 | 0.000093227 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |