Functional clusters
Information
- Type InterPro
- Description NRAMP family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_04 | 5 | CH_aof_89 | 3 | 3 | 0.00000141429 |
| Amborella trichopoda | AmTr_v1.0_scaffold00203 | 5 | CH_atr_36 | 7 | 9 | 8.55318e-20 |
| Calamus simplicifolius | scaffold1322 | 5 | CH_calsi_441 | 2 | 2 | 0.000201396 |
| Cenchrus purpureus | GWHAORA00000010 | 5 | CH_cpu_1528 | 3 | 8 | 0.000437196 |
| Cenchrus purpureus | GWHAORA00000004 | 5 | CH_cpu_995 | 3 | 3 | 0.00000782127 |
| Digitaria exilis | Dexi_CM05836_chr02B | 5 | CH_dex_1002 | 3 | 5 | 0.0000679727 |
| Digitaria exilis | Dexi_CM05836_chr02A | 5 | CH_dex_1003 | 3 | 5 | 0.0000679727 |
| Eragrostis curvula | 5 | 5 | CH_ecu_916 | 3 | 4 | 0.00000613223 |
| Magnolia biondii | Chr08 | 5 | CH_mbi_1206 | 2 | 2 | 0.000728491 |
| Oryza brachyantha | 3 | 5 | CH_obr_302 | 3 | 5 | 0.0000117696 |
| Oryza sativa ssp. japonica | chr07 | 5 | CH_osa_509 | 3 | 7 | 0.0000532497 |
| Phyllostachys edulis | hic_scaffold_10 | 5 | CH_ped_542 | 3 | 5 | 0.0000283742 |
| Panicum hallii | Chr09 | 5 | CH_pha_341 | 3 | 3 | 0.00000184382 |
| Populus trichocarpa | Chr05 | 5 | CH_ptr_370 | 3 | 3 | 0.000000826885 |
| Sorghum bicolor | Chr01 | 5 | CH_sbi_380 | 3 | 3 | 0.00000147664 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1446 | 3 | 3 | 0.00000818762 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1549 | 3 | 4 | 0.0000327365 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_1550 | 3 | 4 | 0.0000327365 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_562 | 6 | 16 | 0.0000000000087201 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_960 | 4 | 5 | 0.0000000219289 |
| Setaria italica | scaffold_9 | 5 | CH_sit_412 | 3 | 3 | 0.00000144536 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_174 | 4 | 4 | 0.000000000127398 |
| Selaginella moellendorffii | scaffold_7 | 5 | CH_smo_252 | 3 | 15 | 0.000207797 |
| Saccharum spontaneum | Chr1D | 5 | CH_ssp_940 | 3 | 3 | 0.00000720337 |
| Setaria viridis | Chr_09 | 5 | CH_svi_532 | 3 | 6 | 0.0000233449 |
| Vanilla planifolia | CM028161.1 | 5 | CH_vpl_581 | 3 | 18 | 0.000373241 |
| Asparagus officinalis | AsparagusV1_04 | 6 | CH_aof_89 | 3 | 3 | 0.00000141429 |
| Amborella trichopoda | AmTr_v1.0_scaffold00203 | 6 | CH_atr_36 | 7 | 9 | 8.55318e-20 |
| Calamus simplicifolius | scaffold1322 | 6 | CH_calsi_441 | 2 | 2 | 0.000201396 |
| Cenchrus purpureus | GWHAORA00000010 | 6 | CH_cpu_1528 | 3 | 8 | 0.000437196 |
| Cenchrus purpureus | GWHAORA00000004 | 6 | CH_cpu_995 | 3 | 3 | 0.00000782127 |
| Digitaria exilis | Dexi_CM05836_chr02B | 6 | CH_dex_1002 | 3 | 5 | 0.0000679727 |
| Digitaria exilis | Dexi_CM05836_chr02A | 6 | CH_dex_1003 | 3 | 5 | 0.0000679727 |
| Eragrostis curvula | 5 | 6 | CH_ecu_916 | 3 | 4 | 0.00000613223 |
| Magnolia biondii | Chr08 | 6 | CH_mbi_1206 | 2 | 2 | 0.000728491 |
| Oryza brachyantha | 3 | 6 | CH_obr_302 | 3 | 5 | 0.0000117696 |
| Oryza sativa ssp. japonica | chr07 | 6 | CH_osa_509 | 3 | 7 | 0.0000532497 |
| Phyllostachys edulis | hic_scaffold_10 | 6 | CH_ped_542 | 3 | 5 | 0.0000283742 |
| Panicum hallii | Chr09 | 6 | CH_pha_341 | 3 | 3 | 0.00000184382 |
| Populus trichocarpa | Chr05 | 6 | CH_ptr_370 | 3 | 3 | 0.000000826885 |
| Sorghum bicolor | Chr01 | 6 | CH_sbi_380 | 3 | 3 | 0.00000147664 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1446 | 3 | 3 | 0.00000818762 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1549 | 3 | 4 | 0.0000327365 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_1550 | 3 | 4 | 0.0000327365 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_562 | 6 | 16 | 0.0000000000087201 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_960 | 4 | 5 | 0.0000000219289 |
| Setaria italica | scaffold_9 | 6 | CH_sit_412 | 3 | 3 | 0.00000144536 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_174 | 4 | 4 | 0.000000000127398 |
| Selaginella moellendorffii | scaffold_7 | 6 | CH_smo_252 | 3 | 15 | 0.000207797 |
| Saccharum spontaneum | Chr1D | 6 | CH_ssp_940 | 3 | 3 | 0.00000720337 |
| Setaria viridis | Chr_09 | 6 | CH_svi_532 | 3 | 6 | 0.0000233449 |
| Vanilla planifolia | CM028161.1 | 6 | CH_vpl_581 | 3 | 18 | 0.000373241 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |