Functional clusters
Information
- Type Gene Ontology
- Description (-)-pinoresinol biosynthetic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr8 | 3 | CH_asa_648 | 2 | 2 | 0.000232522 |
| Aegilops tauschii | 2D | 3 | CH_ata_19 | 6 | 10 | 3.83014e-17 |
| Amborella trichopoda | AmTr_v1.0_scaffold00004 | 3 | CH_atr_223 | 2 | 2 | 0.0000794407 |
| Cenchrus purpureus | GWHAORA00000002 | 3 | CH_cpu_745 | 2 | 2 | 0.000185483 |
| Cenchrus purpureus | GWHAORA00000010 | 3 | CH_cpu_746 | 2 | 2 | 0.000185483 |
| Digitaria exilis | Dexi_CM05836_chr02B | 3 | CH_dex_202 | 3 | 3 | 0.0000000335079 |
| Glycine max | Gm08 | 3 | CH_gma_382 | 2 | 2 | 0.000113867 |
| Hordeum vulgare | chr2H | 3 | CH_hvu_441 | 2 | 4 | 0.000730455 |
| Lolium perenne | Lp_chr2_0 | 3 | CH_lpe_52 | 4 | 9 | 0.0000000000348656 |
| Oryza alta | GWHAZTO00000007 | 3 | CH_oal_61 | 6 | 47 | 0.00000000000236623 |
| Oryza alta | GWHAZTO00000019 | 3 | CH_oal_88 | 6 | 80 | 0.0000000000670497 |
| Oryza brachyantha | 7 | 3 | CH_obr_94 | 4 | 54 | 0.000000201929 |
| Oryza sativa ssp. indica | Chr7 | 3 | CH_osaindica_127 | 4 | 60 | 0.000000201422 |
| Oryza sativa Kitaake | Chr7 | 3 | CH_osak_40 | 7 | 49 | 0.00000000000000384729 |
| Oryza sativa ssp. japonica | chr07 | 3 | CH_osa_140 | 4 | 52 | 0.000000119492 |
| Panicum hallii | Chr02 | 3 | CH_pha_267 | 2 | 2 | 0.0000581108 |
| Secale cereale | GWHASIY00000007 | 3 | CH_sce_83 | 5 | 11 | 0.00000000000374982 |
| Setaria italica | scaffold_2 | 3 | CH_sit_120 | 3 | 3 | 0.00000000505369 |
| Spirodela polyrhiza | pseudo8 | 3 | CH_spo_169 | 2 | 3 | 0.000305748 |
| Saccharum spontaneum | Chr2B | 3 | CH_ssp_915 | 2 | 3 | 0.000429449 |
| Setaria viridis | Chr_02 | 3 | CH_svi_146 | 3 | 6 | 0.0000000816735 |
| Triticum aestivum | Chr2A | 3 | CH_tae_231 | 5 | 8 | 0.00000000000172995 |
| Triticum aestivum | Chr2D | 3 | CH_tae_232 | 5 | 8 | 0.00000000000172995 |
| Triticum aestivum | Chr2B | 3 | CH_tae_410 | 4 | 7 | 0.00000000608386 |
| Triticum aestivum | ChrUnknown | 3 | CH_tae_680 | 3 | 3 | 0.000000929618 |
| Triticum aestivum | Chr2A | 3 | CH_tae_772 | 3 | 4 | 0.00000371792 |
| Triticum dicoccoides | 2B | 3 | CH_tdi_234 | 3 | 5 | 0.000000740116 |
| Triticum turgidum | chr2A | 3 | CH_ttu_70 | 5 | 8 | 0.000000000000050485 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00001.1 | 3 | CH_zjn_244 | 2 | 2 | 0.000555144 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00044.1 | 3 | CH_zjn_38 | 3 | 3 | 0.0000000410921 |
| Allium sativum | chr8 | 4 | CH_asa_648 | 2 | 2 | 0.000232522 |
| Aegilops tauschii | 2D | 4 | CH_ata_19 | 6 | 10 | 3.83014e-17 |
| Amborella trichopoda | AmTr_v1.0_scaffold00004 | 4 | CH_atr_223 | 2 | 2 | 0.0000794407 |
| Cenchrus purpureus | GWHAORA00000002 | 4 | CH_cpu_745 | 2 | 2 | 0.000185483 |
| Cenchrus purpureus | GWHAORA00000010 | 4 | CH_cpu_746 | 2 | 2 | 0.000185483 |
| Digitaria exilis | Dexi_CM05836_chr02B | 4 | CH_dex_202 | 3 | 3 | 0.0000000335079 |
| Glycine max | Gm08 | 4 | CH_gma_382 | 2 | 2 | 0.000113867 |
| Hordeum vulgare | chr2H | 4 | CH_hvu_441 | 2 | 4 | 0.000730455 |
| Lolium perenne | Lp_chr2_0 | 4 | CH_lpe_52 | 4 | 9 | 0.0000000000348656 |
| Oryza alta | GWHAZTO00000007 | 4 | CH_oal_61 | 6 | 47 | 0.00000000000236623 |
| Oryza alta | GWHAZTO00000019 | 4 | CH_oal_88 | 6 | 80 | 0.0000000000670497 |
| Oryza brachyantha | 7 | 4 | CH_obr_94 | 4 | 54 | 0.000000201929 |
| Oryza sativa ssp. indica | Chr7 | 4 | CH_osaindica_127 | 4 | 60 | 0.000000201422 |
| Oryza sativa Kitaake | Chr7 | 4 | CH_osak_40 | 7 | 49 | 0.00000000000000384729 |
| Oryza sativa ssp. japonica | chr07 | 4 | CH_osa_140 | 4 | 52 | 0.000000119492 |
| Panicum hallii | Chr02 | 4 | CH_pha_267 | 2 | 2 | 0.0000581108 |
| Secale cereale | GWHASIY00000007 | 4 | CH_sce_83 | 5 | 11 | 0.00000000000374982 |
| Setaria italica | scaffold_2 | 4 | CH_sit_120 | 3 | 3 | 0.00000000505369 |
| Spirodela polyrhiza | pseudo8 | 4 | CH_spo_169 | 2 | 3 | 0.000305748 |
| Saccharum spontaneum | Chr2B | 4 | CH_ssp_915 | 2 | 3 | 0.000429449 |
| Setaria viridis | Chr_02 | 4 | CH_svi_146 | 3 | 6 | 0.0000000816735 |
| Triticum aestivum | Chr2A | 4 | CH_tae_231 | 5 | 8 | 0.00000000000172995 |
| Triticum aestivum | Chr2D | 4 | CH_tae_232 | 5 | 8 | 0.00000000000172995 |
| Triticum aestivum | Chr2B | 4 | CH_tae_410 | 4 | 7 | 0.00000000608386 |
| Triticum aestivum | ChrUnknown | 4 | CH_tae_680 | 3 | 3 | 0.000000929618 |
| Triticum aestivum | Chr2A | 4 | CH_tae_772 | 3 | 4 | 0.00000371792 |
| Triticum dicoccoides | 2B | 4 | CH_tdi_234 | 3 | 5 | 0.000000740116 |
| Triticum turgidum | chr2A | 4 | CH_ttu_70 | 5 | 8 | 0.000000000000050485 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00001.1 | 4 | CH_zjn_244 | 2 | 2 | 0.000555144 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00044.1 | 4 | CH_zjn_38 | 3 | 3 | 0.0000000410921 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |