Functional clusters
Information
- Type Gene Ontology
- Description sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Cenchrus purpureus | GWHAORA00000006 | 3 | CH_cpu_161 | 4 | 5 | 0.0000000000558349 |
| Cenchrus purpureus | GWHAORA00000012 | 3 | CH_cpu_162 | 4 | 5 | 0.0000000000558349 |
| Miscanthus sinensis | Chr01 | 3 | CH_msi_72 | 4 | 4 | 0.0000000000495757 |
| Oryza brachyantha | 3 | 3 | CH_obr_199 | 2 | 2 | 0.0000597336 |
| Oryza sativa ssp. indica | Chr3 | 3 | CH_osaindica_259 | 2 | 2 | 0.0000516609 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_279 | 2 | 2 | 0.0000528123 |
| Oropetium thomaeum | Chromosome_4 | 3 | CH_oth_120 | 2 | 2 | 0.0000711845 |
| Phyllostachys edulis | hic_scaffold_15 | 3 | CH_ped_488 | 2 | 4 | 0.000733372 |
| Sorghum bicolor | Chr01 | 3 | CH_sbi_22 | 6 | 6 | 1.31403e-18 |
| Secale cereale | GWHASIY00000006 | 3 | CH_sce_127 | 4 | 8 | 0.000000000693503 |
| Secale cereale | GWHASIY00000001 | 3 | CH_sce_811 | 2 | 2 | 0.00095611 |
| Setaria italica | scaffold_9 | 3 | CH_sit_35 | 5 | 6 | 5.10841e-16 |
| Saccharum spontaneum | Chr1A | 3 | CH_ssp_104 | 5 | 18 | 0.0000000000624458 |
| Saccharum spontaneum | Chr1C | 3 | CH_ssp_435 | 3 | 6 | 0.00000776757 |
| Setaria viridis | Chr_09 | 3 | CH_svi_30 | 5 | 6 | 3.33606e-16 |
| Zea mays B73 | 1 | 3 | CH_zma_362 | 2 | 4 | 0.000920285 |
| Cenchrus purpureus | GWHAORA00000006 | 4 | CH_cpu_161 | 4 | 5 | 0.0000000000558349 |
| Cenchrus purpureus | GWHAORA00000012 | 4 | CH_cpu_162 | 4 | 5 | 0.0000000000558349 |
| Miscanthus sinensis | Chr01 | 4 | CH_msi_72 | 4 | 4 | 0.0000000000495757 |
| Oryza brachyantha | 3 | 4 | CH_obr_199 | 2 | 2 | 0.0000597336 |
| Oryza sativa ssp. indica | Chr3 | 4 | CH_osaindica_259 | 2 | 2 | 0.0000516609 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_279 | 2 | 2 | 0.0000528123 |
| Oropetium thomaeum | Chromosome_4 | 4 | CH_oth_120 | 2 | 2 | 0.0000711845 |
| Phyllostachys edulis | hic_scaffold_15 | 4 | CH_ped_488 | 2 | 4 | 0.000733372 |
| Sorghum bicolor | Chr01 | 4 | CH_sbi_22 | 6 | 6 | 1.31403e-18 |
| Secale cereale | GWHASIY00000006 | 4 | CH_sce_127 | 4 | 8 | 0.000000000693503 |
| Secale cereale | GWHASIY00000001 | 4 | CH_sce_811 | 2 | 2 | 0.00095611 |
| Setaria italica | scaffold_9 | 4 | CH_sit_35 | 5 | 6 | 5.10841e-16 |
| Saccharum spontaneum | Chr1A | 4 | CH_ssp_104 | 5 | 18 | 0.0000000000624458 |
| Saccharum spontaneum | Chr1C | 4 | CH_ssp_435 | 3 | 6 | 0.00000776757 |
| Setaria viridis | Chr_09 | 4 | CH_svi_30 | 5 | 6 | 3.33606e-16 |
| Zea mays B73 | 1 | 4 | CH_zma_362 | 2 | 4 | 0.000920285 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |