Functional clusters
Information
- Type Gene Ontology
- Description rRNA N-glycosylase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG05 | 3 | CH_aco_84 | 2 | 2 | 0.0000829463 |
| Asparagus officinalis | AsparagusV1_03 | 3 | CH_aof_1 | 7 | 13 | 8.31615e-18 |
| Calamus simplicifolius | scaffold200 | 3 | CH_calsi_1 | 8 | 9 | 7.47755e-20 |
| Calamus simplicifolius | scaffold277 | 3 | CH_calsi_18 | 6 | 8 | 0.000000000000407611 |
| Calamus simplicifolius | scaffold358 | 3 | CH_calsi_245 | 3 | 5 | 0.000246682 |
| Calamus simplicifolius | scaffold403 | 3 | CH_calsi_287 | 3 | 6 | 0.000493024 |
| Cenchrus purpureus | GWHAORA00000009 | 3 | CH_cpu_547 | 4 | 15 | 0.00002145 |
| Eragrostis curvula | Contig44 | 3 | CH_ecu_286 | 4 | 4 | 0.0000000195733 |
| Hordeum vulgare | chr4H | 3 | CH_hvu_271 | 3 | 5 | 0.000028149 |
| Hordeum vulgare | chr4H | 3 | CH_hvu_341 | 3 | 8 | 0.000157503 |
| Miscanthus sinensis | Chr10 | 3 | CH_msi_124 | 5 | 13 | 0.00000000335722 |
| Oryza alta | GWHAZTO00000015 | 3 | CH_oal_306 | 5 | 38 | 0.00000193618 |
| Oryza alta | GWHAZTO00000003 | 3 | CH_oal_52 | 6 | 9 | 0.000000000000162012 |
| Oryza brachyantha | 8 | 3 | CH_obr_211 | 3 | 7 | 0.0000681131 |
| Oryza sativa ssp. indica | Chr3 | 3 | CH_osaindica_137 | 6 | 76 | 0.00000031076 |
| Oryza sativa Kitaake | Chr3 | 3 | CH_osak_67 | 9 | 80 | 0.00000000000224678 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_26 | 8 | 47 | 0.0000000000000389584 |
| Phyllostachys edulis | hic_scaffold_13 | 3 | CH_ped_128 | 4 | 6 | 0.000000038482 |
| Phyllostachys edulis | hic_scaffold_13 | 3 | CH_ped_212 | 4 | 13 | 0.00000182966 |
| Phyllostachys edulis | hic_scaffold_9 | 3 | CH_ped_236 | 3 | 3 | 0.00000572783 |
| Secale cereale | GWHASIY00000005 | 3 | CH_sce_315 | 4 | 8 | 0.00000221217 |
| Secale cereale | GWHASIY00000006 | 3 | CH_sce_450 | 3 | 3 | 0.0000356961 |
| Setaria italica | scaffold_8 | 3 | CH_sit_127 | 4 | 5 | 0.000000011366 |
| Saccharum spontaneum | Chr5D | 3 | CH_ssp_679 | 3 | 12 | 0.000127583 |
| Setaria viridis | Chr_08 | 3 | CH_svi_134 | 4 | 6 | 0.0000000247633 |
| Triticum aestivum | Chr3A | 3 | CH_tae_1384 | 3 | 5 | 0.000702701 |
| Triticum aestivum | Chr5B | 3 | CH_tae_177 | 6 | 6 | 0.0000000000000419701 |
| Triticum dicoccoides | 5B | 3 | CH_tdi_395 | 3 | 3 | 0.0000577372 |
| Triticum turgidum | chr3A | 3 | CH_ttu_306 | 4 | 9 | 0.000000849948 |
| Ananas comosus | LG05 | 4 | CH_aco_84 | 2 | 2 | 0.0000829463 |
| Asparagus officinalis | AsparagusV1_03 | 4 | CH_aof_1 | 7 | 13 | 8.31615e-18 |
| Calamus simplicifolius | scaffold200 | 4 | CH_calsi_1 | 8 | 9 | 7.47755e-20 |
| Calamus simplicifolius | scaffold277 | 4 | CH_calsi_18 | 6 | 8 | 0.000000000000407611 |
| Calamus simplicifolius | scaffold358 | 4 | CH_calsi_245 | 3 | 5 | 0.000246682 |
| Calamus simplicifolius | scaffold403 | 4 | CH_calsi_287 | 3 | 6 | 0.000493024 |
| Cenchrus purpureus | GWHAORA00000009 | 4 | CH_cpu_547 | 4 | 15 | 0.00002145 |
| Eragrostis curvula | Contig44 | 4 | CH_ecu_286 | 4 | 4 | 0.0000000195733 |
| Hordeum vulgare | chr4H | 4 | CH_hvu_271 | 3 | 5 | 0.000028149 |
| Hordeum vulgare | chr4H | 4 | CH_hvu_341 | 3 | 8 | 0.000157503 |
| Miscanthus sinensis | Chr10 | 4 | CH_msi_124 | 5 | 13 | 0.00000000335722 |
| Oryza alta | GWHAZTO00000015 | 4 | CH_oal_306 | 5 | 38 | 0.00000193618 |
| Oryza alta | GWHAZTO00000003 | 4 | CH_oal_52 | 6 | 9 | 0.000000000000162012 |
| Oryza brachyantha | 8 | 4 | CH_obr_211 | 3 | 7 | 0.0000681131 |
| Oryza sativa ssp. indica | Chr3 | 4 | CH_osaindica_137 | 6 | 76 | 0.00000031076 |
| Oryza sativa Kitaake | Chr3 | 4 | CH_osak_67 | 9 | 80 | 0.00000000000224678 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_26 | 8 | 47 | 0.0000000000000389584 |
| Phyllostachys edulis | hic_scaffold_13 | 4 | CH_ped_128 | 4 | 6 | 0.000000038482 |
| Phyllostachys edulis | hic_scaffold_13 | 4 | CH_ped_212 | 4 | 13 | 0.00000182966 |
| Phyllostachys edulis | hic_scaffold_9 | 4 | CH_ped_236 | 3 | 3 | 0.00000572783 |
| Secale cereale | GWHASIY00000005 | 4 | CH_sce_315 | 4 | 8 | 0.00000221217 |
| Secale cereale | GWHASIY00000006 | 4 | CH_sce_450 | 3 | 3 | 0.0000356961 |
| Setaria italica | scaffold_8 | 4 | CH_sit_127 | 4 | 5 | 0.000000011366 |
| Saccharum spontaneum | Chr5D | 4 | CH_ssp_679 | 3 | 12 | 0.000127583 |
| Setaria viridis | Chr_08 | 4 | CH_svi_134 | 4 | 6 | 0.0000000247633 |
| Triticum aestivum | Chr3A | 4 | CH_tae_1384 | 3 | 5 | 0.000702701 |
| Triticum aestivum | Chr5B | 4 | CH_tae_177 | 6 | 6 | 0.0000000000000419701 |
| Triticum dicoccoides | 5B | 4 | CH_tdi_395 | 3 | 3 | 0.0000577372 |
| Triticum turgidum | chr3A | 4 | CH_ttu_306 | 4 | 9 | 0.000000849948 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |