Functional clusters
Information
- Type Gene Ontology
- Description oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG17 | 3 | CH_aco_74 | 3 | 3 | 0.0000736887 |
| Allium sativum | chr6 | 3 | CH_asa_744 | 3 | 4 | 0.000559883 |
| Amborella trichopoda | AmTr_v1.0_scaffold00104 | 3 | CH_atr_162 | 4 | 6 | 0.0000109624 |
| Amborella trichopoda | AmTr_v1.0_scaffold00020 | 3 | CH_atr_17 | 9 | 10 | 3.32131e-19 |
| Amborella trichopoda | AmTr_v1.0_scaffold00066 | 3 | CH_atr_24 | 8 | 9 | 1.4468e-16 |
| Amborella trichopoda | AmTr_v1.0_scaffold00013 | 3 | CH_atr_278 | 3 | 3 | 0.000323948 |
| Brachypodium distachyon | Bd4 | 3 | CH_bdi_45 | 5 | 5 | 0.0000000000408977 |
| Calamus simplicifolius | scaffold543 | 3 | CH_calsi_17 | 6 | 6 | 0.000000000000329523 |
| Calamus simplicifolius | scaffold800 | 3 | CH_calsi_210 | 3 | 3 | 0.000109618 |
| Cenchrus purpureus | GWHAORA00000001 | 3 | CH_cpu_202 | 8 | 47 | 0.00000000138917 |
| Cenchrus purpureus | GWHAORA00000008 | 3 | CH_cpu_349 | 4 | 4 | 0.000000591442 |
| Dioscorea dumetorum | contig189 | 3 | CH_ddu_16 | 9 | 9 | 1.08893e-20 |
| Dioscorea dumetorum | contig705 | 3 | CH_ddu_20 | 9 | 10 | 1.08717e-19 |
| Digitaria exilis | Dexi_CM05836_chr03B | 3 | CH_dex_131 | 5 | 5 | 0.000000000271678 |
| Digitaria exilis | Dexi_CM05836_chr03A | 3 | CH_dex_247 | 4 | 4 | 0.000000205791 |
| Digitaria exilis | Dexi_CM05836_chr08B | 3 | CH_dex_503 | 3 | 3 | 0.000153937 |
| Eragrostis curvula | 6 | 3 | CH_ecu_224 | 6 | 14 | 0.000000000769715 |
| Elaeis guineensis | EG5.1_Chr2 | 3 | CH_egu_62 | 4 | 4 | 0.000000285517 |
| Glycine max | Gm19 | 3 | CH_gma_207 | 4 | 4 | 0.000000301462 |
| Musa acuminata | chr07 | 3 | CH_mac_157 | 3 | 3 | 0.0000735106 |
| Magnolia biondii | Chr07 | 3 | CH_mbi_292 | 6 | 33 | 0.00000141459 |
| Magnolia biondii | Chr13 | 3 | CH_mbi_542 | 3 | 3 | 0.000248727 |
| Miscanthus sinensis | Chr09 | 3 | CH_msi_77 | 6 | 10 | 0.0000000000765541 |
| Oryza alta | GWHAZTO00000012 | 3 | CH_oal_184 | 5 | 13 | 0.0000000432045 |
| Oryza alta | GWHAZTO00000024 | 3 | CH_oal_431 | 4 | 14 | 0.000042708 |
| Oryza brachyantha | 12 | 3 | CH_obr_257 | 3 | 4 | 0.000195495 |
| Oryza sativa ssp. indica | Chr12 | 3 | CH_osaindica_78 | 5 | 7 | 0.0000000015352 |
| Oryza sativa Kitaake | Chr12 | 3 | CH_osak_138 | 5 | 9 | 0.0000000161762 |
| Phyllostachys edulis | hic_scaffold_16 | 3 | CH_ped_103 | 5 | 6 | 0.00000000228896 |
| Phyllostachys edulis | hic_scaffold_24 | 3 | CH_ped_200 | 4 | 5 | 0.00000130035 |
| Phyllostachys edulis | hic_scaffold_8 | 3 | CH_ped_485 | 3 | 4 | 0.000699494 |
| Populus trichocarpa | Chr07 | 3 | CH_ptr_247 | 5 | 11 | 0.000000756196 |
| Sorghum bicolor | Chr05 | 3 | CH_sbi_300 | 3 | 3 | 0.00006838 |
| Secale cereale | GWHASIY00000002 | 3 | CH_sce_316 | 5 | 18 | 0.00000224683 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_1354 | 3 | 3 | 0.00092602 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_781 | 4 | 4 | 0.00000257146 |
| Saccharum spontaneum | Chr7C | 3 | CH_ssp_154 | 5 | 6 | 0.00000000244064 |
| Saccharum spontaneum | Chr7A | 3 | CH_ssp_771 | 3 | 3 | 0.000222121 |
| Vanilla planifolia | CM028151.1 | 3 | CH_vpl_223 | 3 | 3 | 0.0000809118 |
| Ananas comosus | LG17 | 4 | CH_aco_74 | 3 | 3 | 0.0000736887 |
| Allium sativum | chr6 | 4 | CH_asa_744 | 3 | 4 | 0.000559883 |
| Amborella trichopoda | AmTr_v1.0_scaffold00104 | 4 | CH_atr_162 | 4 | 6 | 0.0000109624 |
| Amborella trichopoda | AmTr_v1.0_scaffold00020 | 4 | CH_atr_17 | 9 | 10 | 3.32131e-19 |
| Amborella trichopoda | AmTr_v1.0_scaffold00066 | 4 | CH_atr_24 | 8 | 9 | 1.4468e-16 |
| Amborella trichopoda | AmTr_v1.0_scaffold00013 | 4 | CH_atr_278 | 3 | 3 | 0.000323948 |
| Brachypodium distachyon | Bd4 | 4 | CH_bdi_45 | 5 | 5 | 0.0000000000408977 |
| Calamus simplicifolius | scaffold543 | 4 | CH_calsi_17 | 6 | 6 | 0.000000000000329523 |
| Calamus simplicifolius | scaffold800 | 4 | CH_calsi_210 | 3 | 3 | 0.000109618 |
| Cenchrus purpureus | GWHAORA00000001 | 4 | CH_cpu_202 | 8 | 47 | 0.00000000138917 |
| Cenchrus purpureus | GWHAORA00000008 | 4 | CH_cpu_349 | 4 | 4 | 0.000000591442 |
| Dioscorea dumetorum | contig189 | 4 | CH_ddu_16 | 9 | 9 | 1.08893e-20 |
| Dioscorea dumetorum | contig705 | 4 | CH_ddu_20 | 9 | 10 | 1.08717e-19 |
| Digitaria exilis | Dexi_CM05836_chr03B | 4 | CH_dex_131 | 5 | 5 | 0.000000000271678 |
| Digitaria exilis | Dexi_CM05836_chr03A | 4 | CH_dex_247 | 4 | 4 | 0.000000205791 |
| Digitaria exilis | Dexi_CM05836_chr08B | 4 | CH_dex_503 | 3 | 3 | 0.000153937 |
| Eragrostis curvula | 6 | 4 | CH_ecu_224 | 6 | 14 | 0.000000000769715 |
| Elaeis guineensis | EG5.1_Chr2 | 4 | CH_egu_62 | 4 | 4 | 0.000000285517 |
| Glycine max | Gm19 | 4 | CH_gma_207 | 4 | 4 | 0.000000301462 |
| Musa acuminata | chr07 | 4 | CH_mac_157 | 3 | 3 | 0.0000735106 |
| Magnolia biondii | Chr07 | 4 | CH_mbi_292 | 6 | 33 | 0.00000141459 |
| Magnolia biondii | Chr13 | 4 | CH_mbi_542 | 3 | 3 | 0.000248727 |
| Miscanthus sinensis | Chr09 | 4 | CH_msi_77 | 6 | 10 | 0.0000000000765541 |
| Oryza alta | GWHAZTO00000012 | 4 | CH_oal_184 | 5 | 13 | 0.0000000432045 |
| Oryza alta | GWHAZTO00000024 | 4 | CH_oal_431 | 4 | 14 | 0.000042708 |
| Oryza brachyantha | 12 | 4 | CH_obr_257 | 3 | 4 | 0.000195495 |
| Oryza sativa ssp. indica | Chr12 | 4 | CH_osaindica_78 | 5 | 7 | 0.0000000015352 |
| Oryza sativa Kitaake | Chr12 | 4 | CH_osak_138 | 5 | 9 | 0.0000000161762 |
| Phyllostachys edulis | hic_scaffold_16 | 4 | CH_ped_103 | 5 | 6 | 0.00000000228896 |
| Phyllostachys edulis | hic_scaffold_24 | 4 | CH_ped_200 | 4 | 5 | 0.00000130035 |
| Phyllostachys edulis | hic_scaffold_8 | 4 | CH_ped_485 | 3 | 4 | 0.000699494 |
| Populus trichocarpa | Chr07 | 4 | CH_ptr_247 | 5 | 11 | 0.000000756196 |
| Sorghum bicolor | Chr05 | 4 | CH_sbi_300 | 3 | 3 | 0.00006838 |
| Secale cereale | GWHASIY00000002 | 4 | CH_sce_316 | 5 | 18 | 0.00000224683 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_1354 | 3 | 3 | 0.00092602 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_781 | 4 | 4 | 0.00000257146 |
| Saccharum spontaneum | Chr7C | 4 | CH_ssp_154 | 5 | 6 | 0.00000000244064 |
| Saccharum spontaneum | Chr7A | 4 | CH_ssp_771 | 3 | 3 | 0.000222121 |
| Vanilla planifolia | CM028151.1 | 4 | CH_vpl_223 | 3 | 3 | 0.0000809118 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0004665 | prephenate dehydrogenase (NADP+) activity | 8 |
| GO:0008670 | 2,4-dienoyl-CoA reductase (NADPH) activity | 32 |
| GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | 6 |
| GO:0010283 | pinoresinol reductase activity | 40 |
| GO:0016629 | 12-oxophytodienoate reductase activity | 26 |
| GO:0016630 | protochlorophyllide reductase activity | 8 |
| GO:0032440 | 2-alkenal reductase [NAD(P)+] activity | 22 |
| GO:0033729 | anthocyanidin reductase activity | 8 |
| GO:0033730 | arogenate dehydrogenase (NADP+) activity | 36 |
| GO:0035671 | enone reductase activity | 40 |
| GO:0035798 | 2-alkenal reductase (NADP+) activity | 2 |
| GO:0047526 | 2'-hydroxyisoflavone reductase activity | 28 |
| GO:0050213 | progesterone 5-alpha-reductase activity | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |