Functional clusters
Information
- Type Gene Ontology
- Description pinoresinol reductase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00048 | 3 | CH_atr_259 | 2 | 3 | 0.000238322 |
| Brachypodium distachyon | Bd4 | 3 | CH_bdi_193 | 2 | 2 | 0.0000616675 |
| Digitaria exilis | Dexi_CM05836_chr03B | 3 | CH_dex_535 | 2 | 2 | 0.000200521 |
| Eragrostis curvula | 6 | 3 | CH_ecu_243 | 4 | 26 | 0.00000000261321 |
| Miscanthus sinensis | Chr14 | 3 | CH_msi_109 | 3 | 3 | 0.00000000155517 |
| Oryza brachyantha | 12 | 3 | CH_obr_200 | 2 | 2 | 0.0000597336 |
| Oryza sativa ssp. indica | Chr12 | 3 | CH_osaindica_73 | 4 | 13 | 0.000000000295696 |
| Oryza sativa Kitaake | Chr12 | 3 | CH_osak_97 | 4 | 11 | 0.000000000176515 |
| Oropetium thomaeum | Chromosome_2 | 3 | CH_oth_155 | 2 | 3 | 0.000213546 |
| Panicum hallii | Chr03 | 3 | CH_pha_314 | 2 | 2 | 0.000174332 |
| Sorghum bicolor | Chr08 | 3 | CH_sbi_271 | 2 | 2 | 0.0000586682 |
| Setaria italica | scaffold_3 | 3 | CH_sit_392 | 2 | 2 | 0.00034826 |
| Spirodela polyrhiza | pseudo30 | 3 | CH_spo_33 | 4 | 5 | 0.0000000000158829 |
| Saccharum spontaneum | Chr2B | 3 | CH_ssp_862 | 2 | 2 | 0.000357884 |
| Saccharum spontaneum | Chr2A | 3 | CH_ssp_863 | 2 | 2 | 0.000357884 |
| Triticum aestivum | Chr2B | 3 | CH_tae_94 | 6 | 10 | 9.99981e-18 |
| Triticum dicoccoides | 2B | 3 | CH_tdi_526 | 2 | 2 | 0.00029685 |
| Triticum turgidum | chr2B | 3 | CH_ttu_245 | 3 | 4 | 0.000000117209 |
| Vanilla planifolia | CM028153.1 | 3 | CH_vpl_52 | 3 | 3 | 0.00000000818945 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00048.1 | 3 | CH_zjn_205 | 2 | 3 | 0.000333076 |
| Amborella trichopoda | AmTr_v1.0_scaffold00048 | 4 | CH_atr_259 | 2 | 3 | 0.000238322 |
| Brachypodium distachyon | Bd4 | 4 | CH_bdi_193 | 2 | 2 | 0.0000616675 |
| Digitaria exilis | Dexi_CM05836_chr03B | 4 | CH_dex_535 | 2 | 2 | 0.000200521 |
| Eragrostis curvula | 6 | 4 | CH_ecu_243 | 4 | 26 | 0.00000000261321 |
| Miscanthus sinensis | Chr14 | 4 | CH_msi_109 | 3 | 3 | 0.00000000155517 |
| Oryza brachyantha | 12 | 4 | CH_obr_200 | 2 | 2 | 0.0000597336 |
| Oryza sativa ssp. indica | Chr12 | 4 | CH_osaindica_73 | 4 | 13 | 0.000000000295696 |
| Oryza sativa Kitaake | Chr12 | 4 | CH_osak_97 | 4 | 11 | 0.000000000176515 |
| Oropetium thomaeum | Chromosome_2 | 4 | CH_oth_155 | 2 | 3 | 0.000213546 |
| Panicum hallii | Chr03 | 4 | CH_pha_314 | 2 | 2 | 0.000174332 |
| Sorghum bicolor | Chr08 | 4 | CH_sbi_271 | 2 | 2 | 0.0000586682 |
| Setaria italica | scaffold_3 | 4 | CH_sit_392 | 2 | 2 | 0.00034826 |
| Spirodela polyrhiza | pseudo30 | 4 | CH_spo_33 | 4 | 5 | 0.0000000000158829 |
| Saccharum spontaneum | Chr2B | 4 | CH_ssp_862 | 2 | 2 | 0.000357884 |
| Saccharum spontaneum | Chr2A | 4 | CH_ssp_863 | 2 | 2 | 0.000357884 |
| Triticum aestivum | Chr2B | 4 | CH_tae_94 | 6 | 10 | 9.99981e-18 |
| Triticum dicoccoides | 2B | 4 | CH_tdi_526 | 2 | 2 | 0.00029685 |
| Triticum turgidum | chr2B | 4 | CH_ttu_245 | 3 | 4 | 0.000000117209 |
| Vanilla planifolia | CM028153.1 | 4 | CH_vpl_52 | 3 | 3 | 0.00000000818945 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00048.1 | 4 | CH_zjn_205 | 2 | 3 | 0.000333076 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |