Functional clusters
Information
- Type Gene Ontology
- Description integral component of membrane
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_04 | 3 | CH_aof_119 | 11 | 36 | 0.000262195 |
| Allium sativum | chr8 | 3 | CH_asa_716 | 8 | 16 | 0.000390764 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_105 | 26 | 52 | 0.000000000374025 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_454 | 23 | 65 | 0.0000790155 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_501 | 21 | 56 | 0.000121625 |
| Amborella trichopoda | AmTr_v1.0_scaffold00018 | 3 | CH_atr_139 | 7 | 10 | 0.00000328916 |
| Amborella trichopoda | AmTr_v1.0_scaffold00044 | 3 | CH_atr_242 | 10 | 30 | 0.000176615 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 3 | CH_atr_289 | 6 | 8 | 0.000390548 |
| Amborella trichopoda | AmTr_v1.0_scaffold00055 | 3 | CH_atr_61 | 13 | 25 | 0.000000000874938 |
| Amborella trichopoda | AmTr_v1.0_scaffold00131 | 3 | CH_atr_79 | 8 | 8 | 0.000000012115 |
| Cenchrus purpureus | GWHAORA00000010 | 3 | CH_cpu_761 | 6 | 6 | 0.000204556 |
| Digitaria exilis | Dexi_CM05836_chr02A | 3 | CH_dex_162 | 9 | 9 | 0.0000000029364 |
| Digitaria exilis | Dexi_CM05836_chr02A | 3 | CH_dex_219 | 8 | 8 | 0.000000088606 |
| Digitaria exilis | Dexi_CM05836_chr02B | 3 | CH_dex_315 | 7 | 7 | 0.00000267238 |
| Digitaria exilis | Dexi_CM05836_chr09A | 3 | CH_dex_386 | 7 | 8 | 0.0000207584 |
| Eragrostis curvula | 1 | 3 | CH_ecu_128 | 30 | 37 | 0.000000000000256056 |
| Eragrostis curvula | 7 | 3 | CH_ecu_185 | 29 | 39 | 0.0000000000594401 |
| Eragrostis curvula | Contig50 | 3 | CH_ecu_186 | 29 | 39 | 0.0000000000594401 |
| Eragrostis curvula | Contig50 | 3 | CH_ecu_210 | 30 | 43 | 0.000000000330654 |
| Eragrostis curvula | 3 | 3 | CH_ecu_482 | 22 | 33 | 0.00000563612 |
| Eragrostis curvula | 1 | 3 | CH_ecu_494 | 28 | 50 | 0.00000689446 |
| Eragrostis curvula | 3 | 3 | CH_ecu_526 | 12 | 12 | 0.0000157003 |
| Eragrostis curvula | 3 | 3 | CH_ecu_627 | 30 | 60 | 0.0000612338 |
| Eragrostis curvula | Contig4 | 3 | CH_ecu_795 | 24 | 45 | 0.000531988 |
| Eragrostis curvula | Contig695 | 3 | CH_ecu_873 | 11 | 12 | 0.000997798 |
| Elaeis guineensis | EG5.1_Chr2 | 3 | CH_egu_135 | 7 | 8 | 0.0000611031 |
| Glycine max | Gm06 | 3 | CH_gma_266 | 7 | 7 | 0.00000532396 |
| Glycine max | Gm04 | 3 | CH_gma_395 | 6 | 6 | 0.000142825 |
| Magnolia biondii | Chr14 | 3 | CH_mbi_396 | 7 | 10 | 0.0000279522 |
| Magnolia biondii | Chr08 | 3 | CH_mbi_59 | 21 | 62 | 0.0000000000000549972 |
| Marchantia polymorpha | scaffold_87 | 3 | CH_mpo_101 | 6 | 7 | 0.000245317 |
| Marchantia polymorpha | scaffold_185 | 3 | CH_mpo_134 | 6 | 8 | 0.000951546 |
| Marchantia polymorpha | scaffold_8 | 3 | CH_mpo_27 | 12 | 19 | 0.00000000273476 |
| Oryza alta | GWHAZTO00000016 | 3 | CH_oal_572 | 8 | 19 | 0.000165698 |
| Oryza brachyantha | 6 | 3 | CH_obr_259 | 16 | 21 | 0.000239373 |
| Oryza sativa ssp. japonica | chr05 | 3 | CH_osa_399 | 12 | 14 | 0.000349978 |
| Phyllostachys edulis | hic_scaffold_23 | 3 | CH_ped_238 | 7 | 7 | 0.00000593667 |
| Phyllostachys edulis | hic_scaffold_23 | 3 | CH_ped_367 | 6 | 6 | 0.000155233 |
| Sorghum bicolor | Chr02 | 3 | CH_sbi_243 | 6 | 6 | 0.0000287021 |
| Sorghum bicolor | Chr05 | 3 | CH_sbi_460 | 5 | 5 | 0.000936209 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_1182 | 6 | 7 | 0.000224635 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_326 | 12 | 15 | 0.0000000000107466 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_572 | 9 | 11 | 0.0000000480677 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_756 | 9 | 14 | 0.00000161024 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_838 | 7 | 8 | 0.00000780079 |
| Sequoiadendron giganteum | HRSCAF_1 | 3 | CH_sgi_925 | 6 | 6 | 0.0000329502 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_927 | 7 | 9 | 0.00003417 |
| Setaria italica | scaffold_8 | 3 | CH_sit_229 | 10 | 20 | 0.00000529566 |
| Triticum aestivum | Chr4A | 3 | CH_tae_1018 | 11 | 29 | 0.0000675642 |
| Triticum aestivum | Chr6B | 3 | CH_tae_1056 | 6 | 6 | 0.000106088 |
| Triticum aestivum | Chr6A | 3 | CH_tae_1057 | 6 | 6 | 0.000106088 |
| Triticum aestivum | Chr7B | 3 | CH_tae_1058 | 6 | 6 | 0.000106088 |
| Triticum aestivum | Chr6D | 3 | CH_tae_1059 | 6 | 6 | 0.000106088 |
| Triticum aestivum | Chr6D | 3 | CH_tae_1060 | 6 | 6 | 0.000106088 |
| Vanilla planifolia | CM028161.1 | 3 | CH_vpl_90 | 10 | 16 | 0.000000499356 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00130.1 | 3 | CH_zjn_61 | 8 | 12 | 0.000000825152 |
| Asparagus officinalis | AsparagusV1_04 | 4 | CH_aof_119 | 11 | 36 | 0.000262195 |
| Allium sativum | chr8 | 4 | CH_asa_716 | 8 | 16 | 0.000390764 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_105 | 26 | 52 | 0.000000000374025 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_454 | 23 | 65 | 0.0000790155 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_501 | 21 | 56 | 0.000121625 |
| Amborella trichopoda | AmTr_v1.0_scaffold00018 | 4 | CH_atr_139 | 7 | 10 | 0.00000328916 |
| Amborella trichopoda | AmTr_v1.0_scaffold00044 | 4 | CH_atr_242 | 10 | 30 | 0.000176615 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 4 | CH_atr_289 | 6 | 8 | 0.000390548 |
| Amborella trichopoda | AmTr_v1.0_scaffold00055 | 4 | CH_atr_61 | 13 | 25 | 0.000000000874938 |
| Amborella trichopoda | AmTr_v1.0_scaffold00131 | 4 | CH_atr_79 | 8 | 8 | 0.000000012115 |
| Cenchrus purpureus | GWHAORA00000010 | 4 | CH_cpu_761 | 6 | 6 | 0.000204556 |
| Digitaria exilis | Dexi_CM05836_chr02A | 4 | CH_dex_162 | 9 | 9 | 0.0000000029364 |
| Digitaria exilis | Dexi_CM05836_chr02A | 4 | CH_dex_219 | 8 | 8 | 0.000000088606 |
| Digitaria exilis | Dexi_CM05836_chr02B | 4 | CH_dex_315 | 7 | 7 | 0.00000267238 |
| Digitaria exilis | Dexi_CM05836_chr09A | 4 | CH_dex_386 | 7 | 8 | 0.0000207584 |
| Eragrostis curvula | 1 | 4 | CH_ecu_128 | 30 | 37 | 0.000000000000256056 |
| Eragrostis curvula | 7 | 4 | CH_ecu_185 | 29 | 39 | 0.0000000000594401 |
| Eragrostis curvula | Contig50 | 4 | CH_ecu_186 | 29 | 39 | 0.0000000000594401 |
| Eragrostis curvula | Contig50 | 4 | CH_ecu_210 | 30 | 43 | 0.000000000330654 |
| Eragrostis curvula | 3 | 4 | CH_ecu_482 | 22 | 33 | 0.00000563612 |
| Eragrostis curvula | 1 | 4 | CH_ecu_494 | 28 | 50 | 0.00000689446 |
| Eragrostis curvula | 3 | 4 | CH_ecu_526 | 12 | 12 | 0.0000157003 |
| Eragrostis curvula | 3 | 4 | CH_ecu_627 | 30 | 60 | 0.0000612338 |
| Eragrostis curvula | Contig4 | 4 | CH_ecu_795 | 24 | 45 | 0.000531988 |
| Eragrostis curvula | Contig695 | 4 | CH_ecu_873 | 11 | 12 | 0.000997798 |
| Elaeis guineensis | EG5.1_Chr2 | 4 | CH_egu_135 | 7 | 8 | 0.0000611031 |
| Glycine max | Gm06 | 4 | CH_gma_266 | 7 | 7 | 0.00000532396 |
| Glycine max | Gm04 | 4 | CH_gma_395 | 6 | 6 | 0.000142825 |
| Magnolia biondii | Chr14 | 4 | CH_mbi_396 | 7 | 10 | 0.0000279522 |
| Magnolia biondii | Chr08 | 4 | CH_mbi_59 | 21 | 62 | 0.0000000000000549972 |
| Marchantia polymorpha | scaffold_87 | 4 | CH_mpo_101 | 6 | 7 | 0.000245317 |
| Marchantia polymorpha | scaffold_185 | 4 | CH_mpo_134 | 6 | 8 | 0.000951546 |
| Marchantia polymorpha | scaffold_8 | 4 | CH_mpo_27 | 12 | 19 | 0.00000000273476 |
| Oryza alta | GWHAZTO00000016 | 4 | CH_oal_572 | 8 | 19 | 0.000165698 |
| Oryza brachyantha | 6 | 4 | CH_obr_259 | 16 | 21 | 0.000239373 |
| Oryza sativa ssp. japonica | chr05 | 4 | CH_osa_399 | 12 | 14 | 0.000349978 |
| Phyllostachys edulis | hic_scaffold_23 | 4 | CH_ped_238 | 7 | 7 | 0.00000593667 |
| Phyllostachys edulis | hic_scaffold_23 | 4 | CH_ped_367 | 6 | 6 | 0.000155233 |
| Sorghum bicolor | Chr02 | 4 | CH_sbi_243 | 6 | 6 | 0.0000287021 |
| Sorghum bicolor | Chr05 | 4 | CH_sbi_460 | 5 | 5 | 0.000936209 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_1182 | 6 | 7 | 0.000224635 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_326 | 12 | 15 | 0.0000000000107466 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_572 | 9 | 11 | 0.0000000480677 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_756 | 9 | 14 | 0.00000161024 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_838 | 7 | 8 | 0.00000780079 |
| Sequoiadendron giganteum | HRSCAF_1 | 4 | CH_sgi_925 | 6 | 6 | 0.0000329502 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_927 | 7 | 9 | 0.00003417 |
| Setaria italica | scaffold_8 | 4 | CH_sit_229 | 10 | 20 | 0.00000529566 |
| Triticum aestivum | Chr4A | 4 | CH_tae_1018 | 11 | 29 | 0.0000675642 |
| Triticum aestivum | Chr6B | 4 | CH_tae_1056 | 6 | 6 | 0.000106088 |
| Triticum aestivum | Chr6A | 4 | CH_tae_1057 | 6 | 6 | 0.000106088 |
| Triticum aestivum | Chr7B | 4 | CH_tae_1058 | 6 | 6 | 0.000106088 |
| Triticum aestivum | Chr6D | 4 | CH_tae_1059 | 6 | 6 | 0.000106088 |
| Triticum aestivum | Chr6D | 4 | CH_tae_1060 | 6 | 6 | 0.000106088 |
| Vanilla planifolia | CM028161.1 | 4 | CH_vpl_90 | 10 | 16 | 0.000000499356 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00130.1 | 4 | CH_zjn_61 | 8 | 12 | 0.000000825152 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0005639 | integral component of nuclear inner membrane | 10 |
| GO:0005747 | mitochondrial respiratory chain complex I | 4 |
| GO:0005887 | integral component of plasma membrane | 4 |
| GO:0030176 | integral component of endoplasmic reticulum membrane | 2 |
| GO:0031004 | potassium ion-transporting ATPase complex | 4 |
| GO:0031303 | integral component of endosome membrane | 4 |
| GO:0031307 | integral component of mitochondrial outer membrane | 4 |
| GO:0031357 | integral component of chloroplast inner membrane | 8 |
| GO:0032592 | integral component of mitochondrial membrane | 2 |
| GO:0042765 | GPI-anchor transamidase complex | 2 |
| GO:0043190 | ATP-binding cassette (ABC) transporter complex | 6 |
| GO:0045271 | respiratory chain complex I | 2 |
| GO:0071458 | integral component of cytoplasmic side of endoplasmic reticulum membrane | 4 |
| GO:0072546 | EMC complex | 6 |
| GO:1902495 | transmembrane transporter complex | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |