Functional clusters
Information
- Type Gene Ontology
- Description ligand-gated ion channel activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr8 | 3 | CH_asa_214 | 5 | 21 | 0.0000000950521 |
| Aegilops tauschii | 5D | 3 | CH_ata_13 | 9 | 17 | 1.93272e-19 |
| Aegilops tauschii | 7D | 3 | CH_ata_94 | 5 | 11 | 0.0000000101841 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 3 | CH_atr_12 | 10 | 23 | 1.33074e-20 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 3 | CH_atr_178 | 3 | 3 | 0.0000310127 |
| Brachypodium distachyon | Bd1 | 3 | CH_bdi_111 | 4 | 7 | 0.000000883644 |
| Brachypodium distachyon | Bd4 | 3 | CH_bdi_34 | 6 | 8 | 0.000000000000127234 |
| Calamus simplicifolius | scaffold167 | 3 | CH_calsi_214 | 3 | 4 | 0.000121461 |
| Ceratophyllum demersum | 12 | 3 | CH_cde_160 | 3 | 5 | 0.000273283 |
| Ceratophyllum demersum | 12 | 3 | CH_cde_200 | 3 | 6 | 0.000546155 |
| Cenchrus purpureus | GWHAORA00000010 | 3 | CH_cpu_38 | 9 | 11 | 4.83654e-21 |
| Cenchrus purpureus | GWHAORA00000011 | 3 | CH_cpu_474 | 4 | 8 | 0.00000600805 |
| Cenchrus purpureus | GWHAORA00000002 | 3 | CH_cpu_51 | 8 | 10 | 4.06324e-18 |
| Cenchrus purpureus | GWHAORA00000005 | 3 | CH_cpu_655 | 3 | 3 | 0.0000819327 |
| Dioscorea dumetorum | contig699 | 3 | CH_ddu_202 | 4 | 17 | 0.000235227 |
| Eragrostis curvula | 3 | 3 | CH_ecu_142 | 6 | 8 | 0.000000000000676576 |
| Eragrostis curvula | 7 | 3 | CH_ecu_302 | 5 | 13 | 0.0000000371435 |
| Elaeis guineensis | EG5.1_Chr2 | 3 | CH_egu_1 | 7 | 7 | 1.15957e-16 |
| Elaeis guineensis | EG5.1_Chr7 | 3 | CH_egu_131 | 3 | 3 | 0.0000546562 |
| Glycine max | Gm16 | 3 | CH_gma_352 | 3 | 3 | 0.0000817288 |
| Glycine max | Gm09 | 3 | CH_gma_353 | 3 | 3 | 0.0000817288 |
| Glycine max | Gm06 | 3 | CH_gma_460 | 3 | 4 | 0.000326634 |
| Hordeum vulgare | chr5H | 3 | CH_hvu_22 | 8 | 15 | 7.88788e-17 |
| Hordeum vulgare | chr6H | 3 | CH_hvu_381 | 3 | 5 | 0.000350115 |
| Hordeum vulgare | chr7H | 3 | CH_hvu_52 | 7 | 20 | 0.00000000000122697 |
| Lolium perenne | Lp_chr5_0 | 3 | CH_lpe_28 | 6 | 10 | 0.0000000000000350595 |
| Magnolia biondii | Chr14 | 3 | CH_mbi_14 | 11 | 31 | 2.5764e-22 |
| Miscanthus sinensis | Chr18 | 3 | CH_msi_143 | 5 | 10 | 0.0000000167131 |
| Miscanthus sinensis | Chr19 | 3 | CH_msi_151 | 5 | 11 | 0.0000000306155 |
| Miscanthus sinensis | Chr04 | 3 | CH_msi_31 | 8 | 13 | 7.31439e-17 |
| Miscanthus sinensis | Chr04 | 3 | CH_msi_359 | 3 | 3 | 0.00006793 |
| Miscanthus sinensis | Chr03 | 3 | CH_msi_453 | 3 | 4 | 0.000271512 |
| Miscanthus sinensis | Chr19 | 3 | CH_msi_556 | 3 | 5 | 0.000678262 |
| Oryza alta | GWHAZTO00000021 | 3 | CH_oal_125 | 5 | 10 | 0.00000000169821 |
| Oryza alta | GWHAZTO00000006 | 3 | CH_oal_222 | 4 | 6 | 0.000000179404 |
| Oryza alta | GWHAZTO00000009 | 3 | CH_oal_35 | 8 | 18 | 4.73724e-17 |
| Oryza alta | GWHAZTO00000018 | 3 | CH_oal_38 | 7 | 10 | 2.44072e-16 |
| Oryza brachyantha | 9 | 3 | CH_obr_20 | 6 | 10 | 0.00000000000212876 |
| Oryza brachyantha | 6 | 3 | CH_obr_27 | 5 | 5 | 0.0000000000136096 |
| Oryza sativa ssp. indica | Chr6 | 3 | CH_osaindica_23 | 7 | 11 | 0.00000000000000265186 |
| Oryza sativa ssp. indica | Chr9 | 3 | CH_osaindica_36 | 7 | 20 | 0.000000000000619387 |
| Oryza sativa Kitaake | Chr6 | 3 | CH_osak_23 | 9 | 18 | 8.58646e-19 |
| Oryza sativa Kitaake | Chr9 | 3 | CH_osak_32 | 8 | 17 | 5.25859e-16 |
| Oryza sativa ssp. japonica | chr06 | 3 | CH_osa_28 | 7 | 16 | 0.0000000000000588668 |
| Oryza sativa ssp. japonica | chr09 | 3 | CH_osa_34 | 7 | 20 | 0.000000000000706842 |
| Oropetium thomaeum | Chromosome_2 | 3 | CH_oth_48 | 4 | 5 | 0.000000080844 |
| Oropetium thomaeum | Chromosome_1 | 3 | CH_oth_87 | 3 | 3 | 0.0000197629 |
| Phyllostachys edulis | hic_scaffold_18 | 3 | CH_ped_242 | 4 | 9 | 0.00000636531 |
| Phyllostachys edulis | hic_scaffold_22 | 3 | CH_ped_311 | 3 | 3 | 0.0000518618 |
| Phyllostachys edulis | hic_scaffold_3 | 3 | CH_ped_456 | 3 | 5 | 0.000517836 |
| Panicum hallii | Chr02 | 3 | CH_pha_85 | 5 | 9 | 0.00000000182647 |
| Populus trichocarpa | Chr06 | 3 | CH_ptr_197 | 5 | 8 | 0.000000045074 |
| Populus trichocarpa | Chr11 | 3 | CH_ptr_266 | 4 | 5 | 0.00000221702 |
| Populus trichocarpa | Chr04 | 3 | CH_ptr_406 | 3 | 3 | 0.000240072 |
| Populus trichocarpa | Chr01 | 3 | CH_ptr_65 | 8 | 11 | 7.27696e-16 |
| Sorghum bicolor | Chr02 | 3 | CH_sbi_21 | 8 | 10 | 1.308e-18 |
| Sorghum bicolor | Chr10 | 3 | CH_sbi_445 | 3 | 6 | 0.000800475 |
| Secale cereale | GWHASIY00000005 | 3 | CH_sce_15 | 11 | 27 | 1.15971e-21 |
| Secale cereale | GWHASIY00000007 | 3 | CH_sce_212 | 5 | 13 | 0.000000107022 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_249 | 10 | 39 | 0.000000000000126182 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_5 | 22 | 27 | 1.11481e-49 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_53 | 13 | 17 | 5.24083e-27 |
| Setaria italica | scaffold_2 | 3 | CH_sit_32 | 7 | 8 | 1.61951e-16 |
| Setaria italica | scaffold_4 | 3 | CH_sit_383 | 3 | 5 | 0.000330284 |
| Solanum lycopersicum | SL4.0ch06 | 3 | CH_sly_67 | 5 | 5 | 0.00000000000181158 |
| Spirodela polyrhiza | pseudo28 | 3 | CH_spo_225 | 3 | 7 | 0.000962747 |
| Saccharum spontaneum | Chr2B | 3 | CH_ssp_100 | 7 | 20 | 0.0000000000428694 |
| Saccharum spontaneum | Chr2A | 3 | CH_ssp_24 | 9 | 21 | 1.47458e-16 |
| Saccharum spontaneum | Chr8D | 3 | CH_ssp_326 | 4 | 5 | 0.0000013104 |
| Saccharum spontaneum | Chr8A | 3 | CH_ssp_447 | 4 | 7 | 0.00000915351 |
| Saccharum spontaneum | Chr2C | 3 | CH_ssp_46 | 7 | 9 | 0.000000000000020155 |
| Saccharum spontaneum | Chr2B | 3 | CH_ssp_550 | 4 | 9 | 0.0000328834 |
| Setaria viridis | Chr_02 | 3 | CH_svi_25 | 8 | 13 | 1.00202e-17 |
| Setaria viridis | Chr_04 | 3 | CH_svi_337 | 3 | 4 | 0.000106849 |
| Triticum aestivum | Chr6A | 3 | CH_tae_1108 | 4 | 13 | 0.000158139 |
| Triticum aestivum | Chr6B | 3 | CH_tae_1282 | 4 | 16 | 0.000401386 |
| Triticum aestivum | Chr7D | 3 | CH_tae_1390 | 3 | 4 | 0.000750493 |
| Triticum aestivum | Chr7A | 3 | CH_tae_157 | 8 | 17 | 0.0000000000000098805 |
| Triticum aestivum | Chr5A | 3 | CH_tae_173 | 8 | 19 | 0.0000000000000306565 |
| Triticum aestivum | Chr5D | 3 | CH_tae_47 | 11 | 22 | 4.14812e-22 |
| Triticum aestivum | Chr7B | 3 | CH_tae_59 | 10 | 17 | 1.023e-20 |
| Triticum aestivum | Chr5B | 3 | CH_tae_64 | 10 | 19 | 4.84926e-20 |
| Triticum dicoccoides | 5B | 3 | CH_tdi_40 | 7 | 9 | 0.00000000000000187801 |
| Triticum dicoccoides | 7B | 3 | CH_tdi_45 | 8 | 18 | 0.00000000000000205365 |
| Triticum turgidum | chr7B | 3 | CH_ttu_19 | 10 | 16 | 1.0311e-20 |
| Triticum turgidum | chr5B | 3 | CH_ttu_26 | 10 | 19 | 1.18529e-19 |
| Triticum turgidum | chr6B | 3 | CH_ttu_360 | 4 | 6 | 0.00000366363 |
| Triticum turgidum | chr5A | 3 | CH_ttu_50 | 8 | 13 | 9.97992e-16 |
| Triticum turgidum | chr7A | 3 | CH_ttu_83 | 7 | 14 | 0.00000000000202258 |
| Vanilla planifolia | CM028157.1 | 3 | CH_vpl_113 | 4 | 9 | 0.00000192275 |
| Zea mays B73 | 5 | 3 | CH_zma_258 | 3 | 5 | 0.000256348 |
| Allium sativum | chr8 | 4 | CH_asa_214 | 5 | 21 | 0.0000000950521 |
| Aegilops tauschii | 5D | 4 | CH_ata_13 | 9 | 17 | 1.93272e-19 |
| Aegilops tauschii | 7D | 4 | CH_ata_94 | 5 | 11 | 0.0000000101841 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 4 | CH_atr_12 | 10 | 23 | 1.33074e-20 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 4 | CH_atr_178 | 3 | 3 | 0.0000310127 |
| Brachypodium distachyon | Bd1 | 4 | CH_bdi_111 | 4 | 7 | 0.000000883644 |
| Brachypodium distachyon | Bd4 | 4 | CH_bdi_34 | 6 | 8 | 0.000000000000127234 |
| Calamus simplicifolius | scaffold167 | 4 | CH_calsi_214 | 3 | 4 | 0.000121461 |
| Ceratophyllum demersum | 12 | 4 | CH_cde_160 | 3 | 5 | 0.000273283 |
| Ceratophyllum demersum | 12 | 4 | CH_cde_200 | 3 | 6 | 0.000546155 |
| Cenchrus purpureus | GWHAORA00000010 | 4 | CH_cpu_38 | 9 | 11 | 4.83654e-21 |
| Cenchrus purpureus | GWHAORA00000011 | 4 | CH_cpu_474 | 4 | 8 | 0.00000600805 |
| Cenchrus purpureus | GWHAORA00000002 | 4 | CH_cpu_51 | 8 | 10 | 4.06324e-18 |
| Cenchrus purpureus | GWHAORA00000005 | 4 | CH_cpu_655 | 3 | 3 | 0.0000819327 |
| Dioscorea dumetorum | contig699 | 4 | CH_ddu_202 | 4 | 17 | 0.000235227 |
| Eragrostis curvula | 3 | 4 | CH_ecu_142 | 6 | 8 | 0.000000000000676576 |
| Eragrostis curvula | 7 | 4 | CH_ecu_302 | 5 | 13 | 0.0000000371435 |
| Elaeis guineensis | EG5.1_Chr2 | 4 | CH_egu_1 | 7 | 7 | 1.15957e-16 |
| Elaeis guineensis | EG5.1_Chr7 | 4 | CH_egu_131 | 3 | 3 | 0.0000546562 |
| Glycine max | Gm16 | 4 | CH_gma_352 | 3 | 3 | 0.0000817288 |
| Glycine max | Gm09 | 4 | CH_gma_353 | 3 | 3 | 0.0000817288 |
| Glycine max | Gm06 | 4 | CH_gma_460 | 3 | 4 | 0.000326634 |
| Hordeum vulgare | chr5H | 4 | CH_hvu_22 | 8 | 15 | 7.88788e-17 |
| Hordeum vulgare | chr6H | 4 | CH_hvu_381 | 3 | 5 | 0.000350115 |
| Hordeum vulgare | chr7H | 4 | CH_hvu_52 | 7 | 20 | 0.00000000000122697 |
| Lolium perenne | Lp_chr5_0 | 4 | CH_lpe_28 | 6 | 10 | 0.0000000000000350595 |
| Magnolia biondii | Chr14 | 4 | CH_mbi_14 | 11 | 31 | 2.5764e-22 |
| Miscanthus sinensis | Chr18 | 4 | CH_msi_143 | 5 | 10 | 0.0000000167131 |
| Miscanthus sinensis | Chr19 | 4 | CH_msi_151 | 5 | 11 | 0.0000000306155 |
| Miscanthus sinensis | Chr04 | 4 | CH_msi_31 | 8 | 13 | 7.31439e-17 |
| Miscanthus sinensis | Chr04 | 4 | CH_msi_359 | 3 | 3 | 0.00006793 |
| Miscanthus sinensis | Chr03 | 4 | CH_msi_453 | 3 | 4 | 0.000271512 |
| Miscanthus sinensis | Chr19 | 4 | CH_msi_556 | 3 | 5 | 0.000678262 |
| Oryza alta | GWHAZTO00000021 | 4 | CH_oal_125 | 5 | 10 | 0.00000000169821 |
| Oryza alta | GWHAZTO00000006 | 4 | CH_oal_222 | 4 | 6 | 0.000000179404 |
| Oryza alta | GWHAZTO00000009 | 4 | CH_oal_35 | 8 | 18 | 4.73724e-17 |
| Oryza alta | GWHAZTO00000018 | 4 | CH_oal_38 | 7 | 10 | 2.44072e-16 |
| Oryza brachyantha | 9 | 4 | CH_obr_20 | 6 | 10 | 0.00000000000212876 |
| Oryza brachyantha | 6 | 4 | CH_obr_27 | 5 | 5 | 0.0000000000136096 |
| Oryza sativa ssp. indica | Chr6 | 4 | CH_osaindica_23 | 7 | 11 | 0.00000000000000265186 |
| Oryza sativa ssp. indica | Chr9 | 4 | CH_osaindica_36 | 7 | 20 | 0.000000000000619387 |
| Oryza sativa Kitaake | Chr6 | 4 | CH_osak_23 | 9 | 18 | 8.58646e-19 |
| Oryza sativa Kitaake | Chr9 | 4 | CH_osak_32 | 8 | 17 | 5.25859e-16 |
| Oryza sativa ssp. japonica | chr06 | 4 | CH_osa_28 | 7 | 16 | 0.0000000000000588668 |
| Oryza sativa ssp. japonica | chr09 | 4 | CH_osa_34 | 7 | 20 | 0.000000000000706842 |
| Oropetium thomaeum | Chromosome_2 | 4 | CH_oth_48 | 4 | 5 | 0.000000080844 |
| Oropetium thomaeum | Chromosome_1 | 4 | CH_oth_87 | 3 | 3 | 0.0000197629 |
| Phyllostachys edulis | hic_scaffold_18 | 4 | CH_ped_242 | 4 | 9 | 0.00000636531 |
| Phyllostachys edulis | hic_scaffold_22 | 4 | CH_ped_311 | 3 | 3 | 0.0000518618 |
| Phyllostachys edulis | hic_scaffold_3 | 4 | CH_ped_456 | 3 | 5 | 0.000517836 |
| Panicum hallii | Chr02 | 4 | CH_pha_85 | 5 | 9 | 0.00000000182647 |
| Populus trichocarpa | Chr06 | 4 | CH_ptr_197 | 5 | 8 | 0.000000045074 |
| Populus trichocarpa | Chr11 | 4 | CH_ptr_266 | 4 | 5 | 0.00000221702 |
| Populus trichocarpa | Chr04 | 4 | CH_ptr_406 | 3 | 3 | 0.000240072 |
| Populus trichocarpa | Chr01 | 4 | CH_ptr_65 | 8 | 11 | 7.27696e-16 |
| Sorghum bicolor | Chr02 | 4 | CH_sbi_21 | 8 | 10 | 1.308e-18 |
| Sorghum bicolor | Chr10 | 4 | CH_sbi_445 | 3 | 6 | 0.000800475 |
| Secale cereale | GWHASIY00000005 | 4 | CH_sce_15 | 11 | 27 | 1.15971e-21 |
| Secale cereale | GWHASIY00000007 | 4 | CH_sce_212 | 5 | 13 | 0.000000107022 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_249 | 10 | 39 | 0.000000000000126182 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_5 | 22 | 27 | 1.11481e-49 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_53 | 13 | 17 | 5.24083e-27 |
| Setaria italica | scaffold_2 | 4 | CH_sit_32 | 7 | 8 | 1.61951e-16 |
| Setaria italica | scaffold_4 | 4 | CH_sit_383 | 3 | 5 | 0.000330284 |
| Solanum lycopersicum | SL4.0ch06 | 4 | CH_sly_67 | 5 | 5 | 0.00000000000181158 |
| Spirodela polyrhiza | pseudo28 | 4 | CH_spo_225 | 3 | 7 | 0.000962747 |
| Saccharum spontaneum | Chr2B | 4 | CH_ssp_100 | 7 | 20 | 0.0000000000428694 |
| Saccharum spontaneum | Chr2A | 4 | CH_ssp_24 | 9 | 21 | 1.47458e-16 |
| Saccharum spontaneum | Chr8D | 4 | CH_ssp_326 | 4 | 5 | 0.0000013104 |
| Saccharum spontaneum | Chr8A | 4 | CH_ssp_447 | 4 | 7 | 0.00000915351 |
| Saccharum spontaneum | Chr2C | 4 | CH_ssp_46 | 7 | 9 | 0.000000000000020155 |
| Saccharum spontaneum | Chr2B | 4 | CH_ssp_550 | 4 | 9 | 0.0000328834 |
| Setaria viridis | Chr_02 | 4 | CH_svi_25 | 8 | 13 | 1.00202e-17 |
| Setaria viridis | Chr_04 | 4 | CH_svi_337 | 3 | 4 | 0.000106849 |
| Triticum aestivum | Chr6A | 4 | CH_tae_1108 | 4 | 13 | 0.000158139 |
| Triticum aestivum | Chr6B | 4 | CH_tae_1282 | 4 | 16 | 0.000401386 |
| Triticum aestivum | Chr7D | 4 | CH_tae_1390 | 3 | 4 | 0.000750493 |
| Triticum aestivum | Chr7A | 4 | CH_tae_157 | 8 | 17 | 0.0000000000000098805 |
| Triticum aestivum | Chr5A | 4 | CH_tae_173 | 8 | 19 | 0.0000000000000306565 |
| Triticum aestivum | Chr5D | 4 | CH_tae_47 | 11 | 22 | 4.14812e-22 |
| Triticum aestivum | Chr7B | 4 | CH_tae_59 | 10 | 17 | 1.023e-20 |
| Triticum aestivum | Chr5B | 4 | CH_tae_64 | 10 | 19 | 4.84926e-20 |
| Triticum dicoccoides | 5B | 4 | CH_tdi_40 | 7 | 9 | 0.00000000000000187801 |
| Triticum dicoccoides | 7B | 4 | CH_tdi_45 | 8 | 18 | 0.00000000000000205365 |
| Triticum turgidum | chr7B | 4 | CH_ttu_19 | 10 | 16 | 1.0311e-20 |
| Triticum turgidum | chr5B | 4 | CH_ttu_26 | 10 | 19 | 1.18529e-19 |
| Triticum turgidum | chr6B | 4 | CH_ttu_360 | 4 | 6 | 0.00000366363 |
| Triticum turgidum | chr5A | 4 | CH_ttu_50 | 8 | 13 | 9.97992e-16 |
| Triticum turgidum | chr7A | 4 | CH_ttu_83 | 7 | 14 | 0.00000000000202258 |
| Vanilla planifolia | CM028157.1 | 4 | CH_vpl_113 | 4 | 9 | 0.00000192275 |
| Zea mays B73 | 5 | 4 | CH_zma_258 | 3 | 5 | 0.000256348 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0004970 | ionotropic glutamate receptor activity | 2 |
| GO:0005223 | intracellular cGMP-activated cation channel activity | 2 |
| GO:0005230 | extracellular ligand-gated ion channel activity | 2 |
| GO:0099604 | ligand-gated calcium channel activity | 10 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |