Functional clusters
Information
- Type Gene Ontology
- Description carnitine transmembrane transporter activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_03 | 3 | CH_aof_91 | 3 | 26 | 0.0000890074 |
| Allium sativum | chr6 | 3 | CH_asa_228 | 4 | 15 | 0.000000170124 |
| Allium sativum | chr4 | 3 | CH_asa_64 | 6 | 25 | 0.000000000000596277 |
| Cenchrus purpureus | GWHAORA00000006 | 3 | CH_cpu_305 | 3 | 3 | 0.000000120415 |
| Cenchrus purpureus | GWHAORA00000012 | 3 | CH_cpu_306 | 3 | 3 | 0.000000120415 |
| Magnolia biondii | Chr03 | 3 | CH_mbi_567 | 2 | 4 | 0.000291382 |
| Miscanthus sinensis | Chr02 | 3 | CH_msi_604 | 2 | 3 | 0.000965919 |
| Miscanthus sinensis | Chr01 | 3 | CH_msi_605 | 2 | 3 | 0.000965919 |
| Oryza alta | GWHAZTO00000019 | 3 | CH_oal_590 | 2 | 2 | 0.000201513 |
| Oryza brachyantha | 7 | 3 | CH_obr_270 | 2 | 4 | 0.00035838 |
| Oryza sativa ssp. indica | Chr7 | 3 | CH_osaindica_95 | 3 | 3 | 0.0000000160135 |
| Oryza sativa Kitaake | Chr7 | 3 | CH_osak_166 | 3 | 4 | 0.0000000760323 |
| Panicum hallii | Chr09 | 3 | CH_pha_131 | 3 | 5 | 0.000000202597 |
| Sorghum bicolor | Chr01 | 3 | CH_sbi_413 | 2 | 3 | 0.000527988 |
| Setaria italica | scaffold_9 | 3 | CH_sit_153 | 3 | 4 | 0.000000080855 |
| Saccharum spontaneum | Chr2C | 3 | CH_ssp_1040 | 2 | 2 | 0.00066805 |
| Setaria viridis | Chr_09 | 3 | CH_svi_143 | 3 | 4 | 0.0000000653409 |
| Vanilla planifolia | CM028154.1 | 3 | CH_vpl_322 | 2 | 2 | 0.000443328 |
| Asparagus officinalis | AsparagusV1_03 | 4 | CH_aof_91 | 3 | 26 | 0.0000890074 |
| Allium sativum | chr6 | 4 | CH_asa_228 | 4 | 15 | 0.000000170124 |
| Allium sativum | chr4 | 4 | CH_asa_64 | 6 | 25 | 0.000000000000596277 |
| Cenchrus purpureus | GWHAORA00000006 | 4 | CH_cpu_305 | 3 | 3 | 0.000000120415 |
| Cenchrus purpureus | GWHAORA00000012 | 4 | CH_cpu_306 | 3 | 3 | 0.000000120415 |
| Magnolia biondii | Chr03 | 4 | CH_mbi_567 | 2 | 4 | 0.000291382 |
| Miscanthus sinensis | Chr02 | 4 | CH_msi_604 | 2 | 3 | 0.000965919 |
| Miscanthus sinensis | Chr01 | 4 | CH_msi_605 | 2 | 3 | 0.000965919 |
| Oryza alta | GWHAZTO00000019 | 4 | CH_oal_590 | 2 | 2 | 0.000201513 |
| Oryza brachyantha | 7 | 4 | CH_obr_270 | 2 | 4 | 0.00035838 |
| Oryza sativa ssp. indica | Chr7 | 4 | CH_osaindica_95 | 3 | 3 | 0.0000000160135 |
| Oryza sativa Kitaake | Chr7 | 4 | CH_osak_166 | 3 | 4 | 0.0000000760323 |
| Panicum hallii | Chr09 | 4 | CH_pha_131 | 3 | 5 | 0.000000202597 |
| Sorghum bicolor | Chr01 | 4 | CH_sbi_413 | 2 | 3 | 0.000527988 |
| Setaria italica | scaffold_9 | 4 | CH_sit_153 | 3 | 4 | 0.000000080855 |
| Saccharum spontaneum | Chr2C | 4 | CH_ssp_1040 | 2 | 2 | 0.00066805 |
| Setaria viridis | Chr_09 | 4 | CH_svi_143 | 3 | 4 | 0.0000000653409 |
| Vanilla planifolia | CM028154.1 | 4 | CH_vpl_322 | 2 | 2 | 0.000443328 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |