Functional clusters

Information

  • Type Gene Ontology
  • Description shikimate 3-dehydrogenase (NADP+) activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00057 3 CH_atr_75 3 3 0.00000000946662
Ceratophyllum demersum 11 3 CH_cde_169 2 4 0.00047384
Cenchrus purpureus GWHAORA00000008 3 CH_cpu_740 2 2 0.000185483
Eragrostis curvula Contig25 3 CH_ecu_747 2 3 0.000348941
Elaeis guineensis EG5.1_Chr2 3 CH_egu_155 2 2 0.0000947329
Musa acuminata chr07 3 CH_mac_221 2 2 0.000340909
Miscanthus sinensis Chr15 3 CH_msi_545 2 2 0.000676176
Miscanthus sinensis Chr14 3 CH_msi_546 2 2 0.000676176
Miscanthus sinensis Chr06 3 CH_msi_547 2 2 0.000676176
Oryza sativa ssp. indica Chr1 3 CH_osaindica_314 2 2 0.000154983
Oryza sativa Kitaake Chr1 3 CH_osak_349 2 2 0.000168857
Panicum hallii Chr03 3 CH_pha_312 2 2 0.000174332
Populus trichocarpa Chr13 3 CH_ptr_484 2 2 0.000867002
Sorghum bicolor Chr08 3 CH_sbi_332 2 2 0.000176005
Sequoiadendron giganteum chr10 3 CH_sgi_1260 2 2 0.000487151
Sequoiadendron giganteum chr4 3 CH_sgi_554 3 3 0.0000000355983
Setaria italica scaffold_3 3 CH_sit_348 2 2 0.00017413
Saccharum spontaneum Chr2A 3 CH_ssp_1027 2 2 0.00066805
Setaria viridis Chr_03 3 CH_svi_367 2 2 0.000156535
Amborella trichopoda AmTr_v1.0_scaffold00057 4 CH_atr_75 3 3 0.00000000946662
Ceratophyllum demersum 11 4 CH_cde_169 2 4 0.00047384
Cenchrus purpureus GWHAORA00000008 4 CH_cpu_740 2 2 0.000185483
Eragrostis curvula Contig25 4 CH_ecu_747 2 3 0.000348941
Elaeis guineensis EG5.1_Chr2 4 CH_egu_155 2 2 0.0000947329
Musa acuminata chr07 4 CH_mac_221 2 2 0.000340909
Miscanthus sinensis Chr15 4 CH_msi_545 2 2 0.000676176
Miscanthus sinensis Chr14 4 CH_msi_546 2 2 0.000676176
Miscanthus sinensis Chr06 4 CH_msi_547 2 2 0.000676176
Oryza sativa ssp. indica Chr1 4 CH_osaindica_314 2 2 0.000154983
Oryza sativa Kitaake Chr1 4 CH_osak_349 2 2 0.000168857
Panicum hallii Chr03 4 CH_pha_312 2 2 0.000174332
Populus trichocarpa Chr13 4 CH_ptr_484 2 2 0.000867002
Sorghum bicolor Chr08 4 CH_sbi_332 2 2 0.000176005
Sequoiadendron giganteum chr10 4 CH_sgi_1260 2 2 0.000487151
Sequoiadendron giganteum chr4 4 CH_sgi_554 3 3 0.0000000355983
Setaria italica scaffold_3 4 CH_sit_348 2 2 0.00017413
Saccharum spontaneum Chr2A 4 CH_ssp_1027 2 2 0.00066805
Setaria viridis Chr_03 4 CH_svi_367 2 2 0.000156535

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001