Functional clusters
Information
- Type MapMan
- Description Secondary metabolism.terpenoids.terpene biosynthesis.triterpenoid synthase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_01 | 1 | CH_aof_141 | 2 | 2 | 0.000226775 |
| Allium sativum | chr7_1 | 1 | CH_asa_148 | 4 | 16 | 0.0000000111143 |
| Allium sativum | chr7_1 | 1 | CH_asa_881 | 2 | 2 | 0.000813827 |
| Aegilops tauschii | 6D | 1 | CH_ata_218 | 3 | 11 | 0.0000988864 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_61 | 4 | 5 | 0.000000000353041 |
| Brachypodium distachyon | Bd3 | 1 | CH_bdi_132 | 3 | 4 | 0.00000273763 |
| Chara braunii | BFEA01000197 | 1 | CH_cbr_73 | 2 | 2 | 0.0000719269 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_254 | 5 | 19 | 0.0000000298556 |
| Cenchrus purpureus | GWHAORA00000012 | 1 | CH_cpu_411 | 4 | 12 | 0.00000257589 |
| Cenchrus purpureus | GWHAORA00000013 | 1 | CH_cpu_551 | 3 | 4 | 0.000040925 |
| Dioscorea dumetorum | contig588 | 1 | CH_ddu_65 | 3 | 3 | 0.00000000716027 |
| Eragrostis curvula | 1 | 1 | CH_ecu_435 | 3 | 6 | 0.0000128922 |
| Elaeis guineensis | EG5.1_Chr10 | 1 | CH_egu_336 | 2 | 2 | 0.000947329 |
| Elaeis guineensis | EG5.1_Chr7 | 1 | CH_egu_58 | 3 | 4 | 0.000000538421 |
| Hordeum vulgare | chr6H | 1 | CH_hvu_303 | 3 | 15 | 0.0000942996 |
| Magnolia biondii | Chr13 | 1 | CH_mbi_189 | 3 | 5 | 0.000000353765 |
| Oryza alta | GWHAZTO00000020 | 1 | CH_oal_250 | 3 | 4 | 0.00000198792 |
| Oryza alta | GWHAZTO00000014 | 1 | CH_oal_306 | 3 | 6 | 0.00000993717 |
| Oryza alta | GWHAZTO00000002 | 1 | CH_oal_99 | 4 | 8 | 0.00000000525596 |
| Oryza brachyantha | 2 | 1 | CH_obr_323 | 2 | 2 | 0.000896004 |
| Oryza sativa ssp. indica | Chr11 | 1 | CH_osaindica_184 | 3 | 5 | 0.0000088039 |
| Oryza sativa ssp. indica | Chr2 | 1 | CH_osaindica_74 | 4 | 7 | 0.0000000071625 |
| Oryza sativa Kitaake | Chr11 | 1 | CH_osak_251 | 3 | 5 | 0.0000135849 |
| Oryza sativa Kitaake | Chr2 | 1 | CH_osak_44 | 6 | 10 | 0.00000000000000457815 |
| Oryza sativa ssp. japonica | chr02 | 1 | CH_osa_74 | 4 | 9 | 0.0000000116847 |
| Phyllostachys edulis | hic_scaffold_13 | 1 | CH_ped_103 | 4 | 7 | 0.0000000217199 |
| Populus trichocarpa | Chr14 | 1 | CH_ptr_237 | 3 | 3 | 0.0000022802 |
| Populus trichocarpa | Chr07 | 1 | CH_ptr_289 | 3 | 6 | 0.0000455645 |
| Sorghum bicolor | Chr04 | 1 | CH_sbi_187 | 4 | 13 | 0.00000132129 |
| Setaria italica | scaffold_1 | 1 | CH_sit_102 | 4 | 5 | 0.00000000533733 |
| Solanum lycopersicum | SL4.0ch12 | 1 | CH_sly_161 | 3 | 3 | 0.000000103353 |
| Selaginella moellendorffii | scaffold_98 | 1 | CH_smo_152 | 2 | 2 | 0.000560224 |
| Saccharum spontaneum | Chr6A | 1 | CH_ssp_863 | 4 | 38 | 0.000219488 |
| Setaria viridis | Chr_01 | 1 | CH_svi_121 | 4 | 6 | 0.0000000247633 |
| Setaria viridis | Chr_04 | 1 | CH_svi_252 | 3 | 6 | 0.000039547 |
| Triticum aestivum | Chr4A | 1 | CH_tae_1034 | 4 | 36 | 0.0000943285 |
| Triticum aestivum | Chr6B | 1 | CH_tae_1431 | 3 | 11 | 0.000789876 |
| Triticum aestivum | Chr6D | 1 | CH_tae_348 | 5 | 14 | 0.00000000105608 |
| Triticum dicoccoides | 6A | 1 | CH_tdi_516 | 3 | 13 | 0.000430088 |
| Triticum turgidum | chr6B | 1 | CH_ttu_586 | 3 | 10 | 0.000270315 |
| Triticum turgidum | chr6A | 1 | CH_ttu_635 | 3 | 11 | 0.000371595 |
| Zea mays B73 | 1 | 1 | CH_zma_95 | 3 | 3 | 0.00000112161 |
| Asparagus officinalis | AsparagusV1_01 | 2 | CH_aof_141 | 2 | 2 | 0.000226775 |
| Allium sativum | chr7_1 | 2 | CH_asa_148 | 4 | 16 | 0.0000000111143 |
| Allium sativum | chr7_1 | 2 | CH_asa_881 | 2 | 2 | 0.000813827 |
| Aegilops tauschii | 6D | 2 | CH_ata_218 | 3 | 11 | 0.0000988864 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_61 | 4 | 5 | 0.000000000353041 |
| Brachypodium distachyon | Bd3 | 2 | CH_bdi_132 | 3 | 4 | 0.00000273763 |
| Chara braunii | BFEA01000197 | 2 | CH_cbr_73 | 2 | 2 | 0.0000719269 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_254 | 5 | 19 | 0.0000000298556 |
| Cenchrus purpureus | GWHAORA00000012 | 2 | CH_cpu_411 | 4 | 12 | 0.00000257589 |
| Cenchrus purpureus | GWHAORA00000013 | 2 | CH_cpu_551 | 3 | 4 | 0.000040925 |
| Dioscorea dumetorum | contig588 | 2 | CH_ddu_65 | 3 | 3 | 0.00000000716027 |
| Eragrostis curvula | 1 | 2 | CH_ecu_435 | 3 | 6 | 0.0000128922 |
| Elaeis guineensis | EG5.1_Chr10 | 2 | CH_egu_336 | 2 | 2 | 0.000947329 |
| Elaeis guineensis | EG5.1_Chr7 | 2 | CH_egu_58 | 3 | 4 | 0.000000538421 |
| Hordeum vulgare | chr6H | 2 | CH_hvu_303 | 3 | 15 | 0.0000942996 |
| Magnolia biondii | Chr13 | 2 | CH_mbi_189 | 3 | 5 | 0.000000353765 |
| Oryza alta | GWHAZTO00000020 | 2 | CH_oal_250 | 3 | 4 | 0.00000198792 |
| Oryza alta | GWHAZTO00000014 | 2 | CH_oal_306 | 3 | 6 | 0.00000993717 |
| Oryza alta | GWHAZTO00000002 | 2 | CH_oal_99 | 4 | 8 | 0.00000000525596 |
| Oryza brachyantha | 2 | 2 | CH_obr_323 | 2 | 2 | 0.000896004 |
| Oryza sativa ssp. indica | Chr11 | 2 | CH_osaindica_184 | 3 | 5 | 0.0000088039 |
| Oryza sativa ssp. indica | Chr2 | 2 | CH_osaindica_74 | 4 | 7 | 0.0000000071625 |
| Oryza sativa Kitaake | Chr11 | 2 | CH_osak_251 | 3 | 5 | 0.0000135849 |
| Oryza sativa Kitaake | Chr2 | 2 | CH_osak_44 | 6 | 10 | 0.00000000000000457815 |
| Oryza sativa ssp. japonica | chr02 | 2 | CH_osa_74 | 4 | 9 | 0.0000000116847 |
| Phyllostachys edulis | hic_scaffold_13 | 2 | CH_ped_103 | 4 | 7 | 0.0000000217199 |
| Populus trichocarpa | Chr14 | 2 | CH_ptr_237 | 3 | 3 | 0.0000022802 |
| Populus trichocarpa | Chr07 | 2 | CH_ptr_289 | 3 | 6 | 0.0000455645 |
| Sorghum bicolor | Chr04 | 2 | CH_sbi_187 | 4 | 13 | 0.00000132129 |
| Setaria italica | scaffold_1 | 2 | CH_sit_102 | 4 | 5 | 0.00000000533733 |
| Solanum lycopersicum | SL4.0ch12 | 2 | CH_sly_161 | 3 | 3 | 0.000000103353 |
| Selaginella moellendorffii | scaffold_98 | 2 | CH_smo_152 | 2 | 2 | 0.000560224 |
| Saccharum spontaneum | Chr6A | 2 | CH_ssp_863 | 4 | 38 | 0.000219488 |
| Setaria viridis | Chr_01 | 2 | CH_svi_121 | 4 | 6 | 0.0000000247633 |
| Setaria viridis | Chr_04 | 2 | CH_svi_252 | 3 | 6 | 0.000039547 |
| Triticum aestivum | Chr4A | 2 | CH_tae_1034 | 4 | 36 | 0.0000943285 |
| Triticum aestivum | Chr6B | 2 | CH_tae_1431 | 3 | 11 | 0.000789876 |
| Triticum aestivum | Chr6D | 2 | CH_tae_348 | 5 | 14 | 0.00000000105608 |
| Triticum dicoccoides | 6A | 2 | CH_tdi_516 | 3 | 13 | 0.000430088 |
| Triticum turgidum | chr6B | 2 | CH_ttu_586 | 3 | 10 | 0.000270315 |
| Triticum turgidum | chr6A | 2 | CH_ttu_635 | 3 | 11 | 0.000371595 |
| Zea mays B73 | 1 | 2 | CH_zma_95 | 3 | 3 | 0.00000112161 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |