Functional clusters
Information
- Type MapMan
- Description Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen lyase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr4 | 1 | CH_asa_51 | 5 | 5 | 0.0000000000000739003 |
| Aegilops tauschii | 7D | 1 | CH_ata_101 | 4 | 6 | 0.000000187182 |
| Aegilops tauschii | 2D | 1 | CH_ata_188 | 3 | 4 | 0.0000378099 |
| Aegilops tauschii | 7D | 1 | CH_ata_72 | 5 | 13 | 0.00000000372003 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_178 | 3 | 4 | 0.00000224043 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_187 | 3 | 5 | 0.00000560027 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_79 | 4 | 7 | 0.00000000336895 |
| Cenchrus purpureus | GWHAORA00000003 | 1 | CH_cpu_139 | 8 | 49 | 0.0000000000960429 |
| Cenchrus purpureus | GWHAORA00000008 | 1 | CH_cpu_207 | 5 | 7 | 0.0000000032359 |
| Cenchrus purpureus | GWHAORA00000002 | 1 | CH_cpu_297 | 4 | 4 | 0.000000133172 |
| Cenchrus purpureus | GWHAORA00000012 | 1 | CH_cpu_528 | 4 | 10 | 0.0000278083 |
| Dioscorea dumetorum | contig552 | 1 | CH_ddu_121 | 3 | 4 | 0.00000472463 |
| Eragrostis curvula | 7 | 1 | CH_ecu_119 | 7 | 27 | 0.00000000000527957 |
| Eragrostis curvula | 3 | 1 | CH_ecu_155 | 7 | 49 | 0.000000000504068 |
| Eragrostis curvula | 3 | 1 | CH_ecu_326 | 4 | 7 | 0.000000618718 |
| Eragrostis curvula | 4 | 1 | CH_ecu_421 | 4 | 12 | 0.00000872451 |
| Eragrostis curvula | 5 | 1 | CH_ecu_711 | 4 | 30 | 0.000477889 |
| Elaeis guineensis | EG5.1_Chr10 | 1 | CH_egu_294 | 2 | 2 | 0.000568397 |
| Lolium perenne | Lp_chr3_0 | 1 | CH_lpe_80 | 4 | 4 | 0.00000000358261 |
| Magnolia biondii | Chr15 | 1 | CH_mbi_137 | 6 | 80 | 0.0000000221938 |
| Miscanthus sinensis | Chr04 | 1 | CH_msi_296 | 3 | 3 | 0.0000236076 |
| Miscanthus sinensis | Chr09 | 1 | CH_msi_297 | 3 | 3 | 0.0000236076 |
| Oryza alta | GWHAZTO00000019 | 1 | CH_oal_124 | 4 | 6 | 0.0000000170691 |
| Oryza sativa ssp. indica | Chr9 | 1 | CH_osaindica_156 | 3 | 3 | 0.00000182154 |
| Oryza sativa Kitaake | Chr7 | 1 | CH_osak_156 | 4 | 6 | 0.00000004799 |
| Oryza sativa Kitaake | Chr6 | 1 | CH_osak_265 | 3 | 4 | 0.0000252717 |
| Oryza sativa Kitaake | Chr9 | 1 | CH_osak_333 | 3 | 6 | 0.000126255 |
| Phyllostachys edulis | hic_scaffold_1 | 1 | CH_ped_168 | 4 | 9 | 0.000000699241 |
| Phyllostachys edulis | hic_scaffold_4 | 1 | CH_ped_405 | 3 | 7 | 0.000353268 |
| Populus trichocarpa | Chr16 | 1 | CH_ptr_220 | 3 | 3 | 0.00000110251 |
| Sorghum bicolor | Chr05 | 1 | CH_sbi_168 | 4 | 8 | 0.000000535365 |
| Sorghum bicolor | Chr08 | 1 | CH_sbi_233 | 3 | 3 | 0.0000118751 |
| Secale cereale | GWHASIY00000001 | 1 | CH_sce_262 | 4 | 7 | 0.000000458814 |
| Secale cereale | GWHASIY00000001 | 1 | CH_sce_765 | 3 | 6 | 0.000371518 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_603 | 3 | 3 | 0.00000129578 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_604 | 3 | 3 | 0.00000129578 |
| Setaria italica | scaffold_6 | 1 | CH_sit_218 | 4 | 9 | 0.00000385621 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_113 | 4 | 4 | 0.00000000110411 |
| Saccharum spontaneum | Chr5C | 1 | CH_ssp_282 | 4 | 6 | 0.000000363651 |
| Saccharum spontaneum | Chr2D | 1 | CH_ssp_592 | 3 | 3 | 0.0000339086 |
| Saccharum spontaneum | Chr5A | 1 | CH_ssp_748 | 3 | 4 | 0.00013556 |
| Saccharum spontaneum | Chr2A | 1 | CH_ssp_749 | 3 | 4 | 0.00013556 |
| Triticum aestivum | Chr3B | 1 | CH_tae_1067 | 3 | 4 | 0.00011488 |
| Triticum aestivum | Chr7D | 1 | CH_tae_298 | 5 | 7 | 0.000000000233202 |
| Triticum aestivum | Chr2D | 1 | CH_tae_516 | 4 | 5 | 0.0000000899893 |
| Triticum aestivum | Chr7D | 1 | CH_tae_685 | 4 | 8 | 0.00000125795 |
| Triticum dicoccoides | 7B | 1 | CH_tdi_441 | 3 | 6 | 0.000172834 |
| Zea mays B104 | scaffold8.1958 | 1 | CH_zma-b104_1 | 8 | 17 | 0.00000000000000239757 |
| Zea mays B73 | 8 | 1 | CH_zma_6 | 8 | 10 | 5.55649e-20 |
| Zea mays B73 | 1 | 1 | CH_zma_65 | 4 | 5 | 0.0000000476029 |
| Allium sativum | chr4 | 2 | CH_asa_51 | 5 | 5 | 0.0000000000000739003 |
| Aegilops tauschii | 7D | 2 | CH_ata_101 | 4 | 6 | 0.000000187182 |
| Aegilops tauschii | 2D | 2 | CH_ata_188 | 3 | 4 | 0.0000378099 |
| Aegilops tauschii | 7D | 2 | CH_ata_72 | 5 | 13 | 0.00000000372003 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_178 | 3 | 4 | 0.00000224043 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_187 | 3 | 5 | 0.00000560027 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_79 | 4 | 7 | 0.00000000336895 |
| Cenchrus purpureus | GWHAORA00000003 | 2 | CH_cpu_139 | 8 | 49 | 0.0000000000960429 |
| Cenchrus purpureus | GWHAORA00000008 | 2 | CH_cpu_207 | 5 | 7 | 0.0000000032359 |
| Cenchrus purpureus | GWHAORA00000002 | 2 | CH_cpu_297 | 4 | 4 | 0.000000133172 |
| Cenchrus purpureus | GWHAORA00000012 | 2 | CH_cpu_528 | 4 | 10 | 0.0000278083 |
| Dioscorea dumetorum | contig552 | 2 | CH_ddu_121 | 3 | 4 | 0.00000472463 |
| Eragrostis curvula | 7 | 2 | CH_ecu_119 | 7 | 27 | 0.00000000000527957 |
| Eragrostis curvula | 3 | 2 | CH_ecu_155 | 7 | 49 | 0.000000000504068 |
| Eragrostis curvula | 3 | 2 | CH_ecu_326 | 4 | 7 | 0.000000618718 |
| Eragrostis curvula | 4 | 2 | CH_ecu_421 | 4 | 12 | 0.00000872451 |
| Eragrostis curvula | 5 | 2 | CH_ecu_711 | 4 | 30 | 0.000477889 |
| Elaeis guineensis | EG5.1_Chr10 | 2 | CH_egu_294 | 2 | 2 | 0.000568397 |
| Lolium perenne | Lp_chr3_0 | 2 | CH_lpe_80 | 4 | 4 | 0.00000000358261 |
| Magnolia biondii | Chr15 | 2 | CH_mbi_137 | 6 | 80 | 0.0000000221938 |
| Miscanthus sinensis | Chr04 | 2 | CH_msi_296 | 3 | 3 | 0.0000236076 |
| Miscanthus sinensis | Chr09 | 2 | CH_msi_297 | 3 | 3 | 0.0000236076 |
| Oryza alta | GWHAZTO00000019 | 2 | CH_oal_124 | 4 | 6 | 0.0000000170691 |
| Oryza sativa ssp. indica | Chr9 | 2 | CH_osaindica_156 | 3 | 3 | 0.00000182154 |
| Oryza sativa Kitaake | Chr7 | 2 | CH_osak_156 | 4 | 6 | 0.00000004799 |
| Oryza sativa Kitaake | Chr6 | 2 | CH_osak_265 | 3 | 4 | 0.0000252717 |
| Oryza sativa Kitaake | Chr9 | 2 | CH_osak_333 | 3 | 6 | 0.000126255 |
| Phyllostachys edulis | hic_scaffold_1 | 2 | CH_ped_168 | 4 | 9 | 0.000000699241 |
| Phyllostachys edulis | hic_scaffold_4 | 2 | CH_ped_405 | 3 | 7 | 0.000353268 |
| Populus trichocarpa | Chr16 | 2 | CH_ptr_220 | 3 | 3 | 0.00000110251 |
| Sorghum bicolor | Chr05 | 2 | CH_sbi_168 | 4 | 8 | 0.000000535365 |
| Sorghum bicolor | Chr08 | 2 | CH_sbi_233 | 3 | 3 | 0.0000118751 |
| Secale cereale | GWHASIY00000001 | 2 | CH_sce_262 | 4 | 7 | 0.000000458814 |
| Secale cereale | GWHASIY00000001 | 2 | CH_sce_765 | 3 | 6 | 0.000371518 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_603 | 3 | 3 | 0.00000129578 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_604 | 3 | 3 | 0.00000129578 |
| Setaria italica | scaffold_6 | 2 | CH_sit_218 | 4 | 9 | 0.00000385621 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_113 | 4 | 4 | 0.00000000110411 |
| Saccharum spontaneum | Chr5C | 2 | CH_ssp_282 | 4 | 6 | 0.000000363651 |
| Saccharum spontaneum | Chr2D | 2 | CH_ssp_592 | 3 | 3 | 0.0000339086 |
| Saccharum spontaneum | Chr5A | 2 | CH_ssp_748 | 3 | 4 | 0.00013556 |
| Saccharum spontaneum | Chr2A | 2 | CH_ssp_749 | 3 | 4 | 0.00013556 |
| Triticum aestivum | Chr3B | 2 | CH_tae_1067 | 3 | 4 | 0.00011488 |
| Triticum aestivum | Chr7D | 2 | CH_tae_298 | 5 | 7 | 0.000000000233202 |
| Triticum aestivum | Chr2D | 2 | CH_tae_516 | 4 | 5 | 0.0000000899893 |
| Triticum aestivum | Chr7D | 2 | CH_tae_685 | 4 | 8 | 0.00000125795 |
| Triticum dicoccoides | 7B | 2 | CH_tdi_441 | 3 | 6 | 0.000172834 |
| Zea mays B104 | scaffold8.1958 | 2 | CH_zma-b104_1 | 8 | 17 | 0.00000000000000239757 |
| Zea mays B73 | 8 | 2 | CH_zma_6 | 8 | 10 | 5.55649e-20 |
| Zea mays B73 | 1 | 2 | CH_zma_65 | 4 | 5 | 0.0000000476029 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |