Functional clusters

Information

  • Type MapMan
  • Description Enzyme classification.EC_1 oxidoreductases.EC_1.10 oxidoreductase acting on diphenol or related substance as donor

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_17 4 5 0.000000000976951
Asparagus officinalis AsparagusV1_05 1 CH_aof_56 3 3 0.0000723086
Allium sativum chr3 1 CH_asa_166 6 24 0.0000000236202
Allium sativum chr3 1 CH_asa_436 4 11 0.0000412462
Brachypodium distachyon Bd3 1 CH_bdi_134 4 8 0.0000032419
Brachypodium distachyon Bd3 1 CH_bdi_228 3 4 0.000177151
Brachypodium distachyon Bd4 1 CH_bdi_31 6 10 0.00000000000976612
Calamus simplicifolius scaffold35 1 CH_calsi_188 4 11 0.0000741813
Calamus simplicifolius scaffold417 1 CH_calsi_197 3 3 0.000140783
Calamus simplicifolius scaffold1118 1 CH_calsi_24 5 5 0.000000000357902
Calamus simplicifolius scaffold405 1 CH_calsi_53 5 9 0.0000000448579
Ceratophyllum demersum 7 1 CH_cde_54 4 8 0.00000324408
Cenchrus purpureus GWHAORA00000001 1 CH_cpu_1 30 54 1.00899e-59
Cenchrus purpureus GWHAORA00000007 1 CH_cpu_255 9 76 0.000000030758
Cenchrus purpureus GWHAORA00000005 1 CH_cpu_264 6 14 0.0000000497477
Cenchrus purpureus GWHAORA00000001 1 CH_cpu_512 5 15 0.0000199133
Cenchrus purpureus GWHAORA00000009 1 CH_cpu_97 8 17 0.0000000000024418
Dioscorea dumetorum contig558 1 CH_ddu_60 5 9 0.00000000509413
Digitaria exilis Dexi_CM05836_chr08A 1 CH_dex_134 5 6 0.00000000752041
Digitaria exilis Dexi_CM05836_chr01B 1 CH_dex_296 4 5 0.0000034726
Digitaria exilis Dexi_CM05836_chr01A 1 CH_dex_297 4 5 0.0000034726
Digitaria exilis Dexi_CM05836_chr05A 1 CH_dex_598 3 3 0.000381856
Digitaria exilis Dexi_CM05836_chrUA 1 CH_dex_599 3 3 0.000381856
Digitaria exilis Dexi_CM05836_chr08B 1 CH_dex_86 6 8 0.0000000000626557
Eragrostis curvula 2 1 CH_ecu_107 7 12 0.000000000000610601
Eragrostis curvula Contig544 1 CH_ecu_118 8 29 0.0000000000045283
Eragrostis curvula 2 1 CH_ecu_389 5 18 0.00000322202
Eragrostis curvula 3 1 CH_ecu_615 3 3 0.000178323
Eragrostis curvula 7 1 CH_ecu_710 4 16 0.000471451
Eragrostis curvula Contig8 1 CH_ecu_777 3 4 0.00071249
Elaeis guineensis EG5.1_Chr15 1 CH_egu_177 3 3 0.00012303
Elaeis guineensis EG5.1_Chr3 1 CH_egu_258 3 4 0.000491468
Elaeis guineensis EG5.1_Chr3 1 CH_egu_49 4 4 0.00000020981
Elaeis guineensis EG5.1_Chr5 1 CH_egu_65 4 5 0.00000104761
Glycine max Gm18 1 CH_gma_395 3 4 0.000145921
Glycine max Gm07 1 CH_gma_396 3 3 0.000145921
Glycine max Gm08 1 CH_gma_572 3 4 0.000583075
Glycine max Gm20 1 CH_gma_573 3 4 0.000583075
Hordeum vulgare chr5H 1 CH_hvu_248 3 3 0.0000225787
Lolium perenne Lp_chr3_0 1 CH_lpe_196 4 14 0.0000176869
Lolium perenne Lp_chr6_0 1 CH_lpe_93 5 13 0.0000000157324
Magnolia biondii Chr14 1 CH_mbi_111 5 11 0.00000000455955
Magnolia biondii Chr02 1 CH_mbi_121 7 80 0.00000001345
Magnolia biondii Chr05 1 CH_mbi_151 5 17 0.0000000608541
Miscanthus sinensis Chr08 1 CH_msi_392 3 3 0.000105013
Miscanthus sinensis Chr09 1 CH_msi_393 3 3 0.000105013
Oryza alta GWHAZTO00000024 1 CH_oal_126 5 11 0.000000021025
Oryza alta GWHAZTO00000013 1 CH_oal_149 4 4 0.000000054645
Oryza alta GWHAZTO00000001 1 CH_oal_264 6 64 0.00000271678
Oryza alta GWHAZTO00000013 1 CH_oal_612 3 4 0.000258088
Oryza alta GWHAZTO00000006 1 CH_oal_69 5 6 0.000000000274008
Oryza alta GWHAZTO00000017 1 CH_oal_752 3 5 0.000644805
Oryza alta GWHAZTO00000018 1 CH_oal_753 3 5 0.000644805
Oryza brachyantha 1 1 CH_obr_150 3 3 0.0000350309
Oryza brachyantha 12 1 CH_obr_208 3 4 0.000140019
Oryza sativa ssp. indica Chr1 1 CH_osaindica_346 3 5 0.000394946
Oryza sativa ssp. indica Chr1 1 CH_osaindica_39 6 8 0.000000000000888656
Oryza sativa Kitaake Chr1 1 CH_osak_181 4 5 0.000000244262
Oryza sativa Kitaake Chr1 1 CH_osak_282 3 3 0.0000469523
Oryza sativa Kitaake Chr12 1 CH_osak_428 3 5 0.000468763
Oryza sativa ssp. japonica chr01 1 CH_osa_191 3 3 0.0000480302
Oryza sativa ssp. japonica chr12 1 CH_osa_354 3 5 0.000479535
Oryza sativa ssp. japonica chr01 1 CH_osa_70 5 9 0.00000000623359
Oropetium thomaeum Chromosome_3 1 CH_oth_118 3 3 0.0000197629
Oropetium thomaeum Chromosome_2 1 CH_oth_164 3 4 0.0000790003
Phyllostachys edulis hic_scaffold_1 1 CH_ped_38 7 8 0.0000000000000154729
Phyllostachys edulis hic_scaffold_7 1 CH_ped_8 11 12 1.44266e-25
Panicum hallii Chr08 1 CH_pha_3 13 18 9.16789e-30
Panicum hallii Chr05 1 CH_pha_375 3 4 0.000421498
Panicum hallii Chr05 1 CH_pha_376 3 4 0.000421498
Populus trichocarpa Chr19 1 CH_ptr_122 5 6 0.00000000191646
Populus trichocarpa Chr05 1 CH_ptr_348 3 3 0.000138917
Populus trichocarpa Chr15 1 CH_ptr_480 3 4 0.000555013
Populus trichocarpa Chr16 1 CH_ptr_481 3 4 0.000555013
Sorghum bicolor Chr04 1 CH_sbi_258 3 3 0.0000550386
Sorghum bicolor Chr03 1 CH_sbi_259 3 3 0.0000550386
Sorghum bicolor Chr02 1 CH_sbi_358 3 4 0.000219964
Sorghum bicolor Chr03 1 CH_sbi_416 3 5 0.000549434
Secale cereale GWHASIY00000005 1 CH_sce_274 4 5 0.000000643685
Secale cereale GWHASIY00000004 1 CH_sce_543 3 3 0.000101084
Sequoiadendron giganteum chr4 1 CH_sgi_101 10 13 2.11866e-19
Sequoiadendron giganteum chr2 1 CH_sgi_1164 4 8 0.000160615
Sequoiadendron giganteum chr5 1 CH_sgi_1389 3 3 0.000856012
Sequoiadendron giganteum chr6 1 CH_sgi_1390 3 3 0.000856012
Sequoiadendron giganteum chr5 1 CH_sgi_162 8 10 0.00000000000000505832
Sequoiadendron giganteum chr10 1 CH_sgi_281 6 6 0.0000000000164672
Sequoiadendron giganteum chr2 1 CH_sgi_56 12 14 4.29633e-25
Sequoiadendron giganteum chr2 1 CH_sgi_60 13 20 8.99098e-25
Sequoiadendron giganteum chr3 1 CH_sgi_623 4 4 0.0000023145
Sequoiadendron giganteum chr1 1 CH_sgi_674 4 5 0.0000115474
Setaria italica scaffold_8 1 CH_sit_2 23 45 1.26401e-47
Setaria italica scaffold_5 1 CH_sit_378 3 3 0.000253271
Setaria italica scaffold_1 1 CH_sit_379 3 4 0.000253271
Solanum lycopersicum SL4.0ch05 1 CH_sly_105 5 6 0.000000000651948
Solanum lycopersicum SL4.0ch06 1 CH_sly_363 3 3 0.0000733288
Selaginella moellendorffii scaffold_2 1 CH_smo_60 3 3 0.0000126723
Selaginella moellendorffii scaffold_2 1 CH_smo_61 3 3 0.0000126723
Spirodela polyrhiza pseudo19 1 CH_spo_98 3 3 0.000020725
Saccharum spontaneum Chr3C 1 CH_ssp_1038 3 3 0.000382181
Saccharum spontaneum Chr4C 1 CH_ssp_503 4 6 0.0000093449
Saccharum spontaneum Chr3C 1 CH_ssp_754 5 30 0.000139612
Setaria viridis Chr_08 1 CH_svi_2 24 63 8.17246e-47
Setaria viridis Chr_05 1 CH_svi_378 3 3 0.000213977
Triticum aestivum Chr7B 1 CH_tae_1108 3 3 0.000158849
Triticum aestivum Chr3A 1 CH_tae_1109 3 3 0.000158849
Triticum dicoccoides 3A 1 CH_tdi_423 3 3 0.000108601
Triticum dicoccoides 6B 1 CH_tdi_517 3 4 0.000434025
Zoysia japonica ssp. nagirizaki Zjn_sc00008.1 1 CH_zjn_189 3 5 0.000332477
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_17 4 5 0.000000000976951
Asparagus officinalis AsparagusV1_05 2 CH_aof_56 3 3 0.0000723086
Allium sativum chr3 2 CH_asa_166 6 24 0.0000000236202
Allium sativum chr3 2 CH_asa_436 4 11 0.0000412462
Brachypodium distachyon Bd3 2 CH_bdi_134 4 8 0.0000032419
Brachypodium distachyon Bd3 2 CH_bdi_228 3 4 0.000177151
Brachypodium distachyon Bd4 2 CH_bdi_31 6 10 0.00000000000976612
Calamus simplicifolius scaffold35 2 CH_calsi_188 4 11 0.0000741813
Calamus simplicifolius scaffold417 2 CH_calsi_197 3 3 0.000140783
Calamus simplicifolius scaffold1118 2 CH_calsi_24 5 5 0.000000000357902
Calamus simplicifolius scaffold405 2 CH_calsi_53 5 9 0.0000000448579
Ceratophyllum demersum 7 2 CH_cde_54 4 8 0.00000324408
Cenchrus purpureus GWHAORA00000001 2 CH_cpu_1 30 54 1.00899e-59
Cenchrus purpureus GWHAORA00000007 2 CH_cpu_255 9 76 0.000000030758
Cenchrus purpureus GWHAORA00000005 2 CH_cpu_264 6 14 0.0000000497477
Cenchrus purpureus GWHAORA00000001 2 CH_cpu_512 5 15 0.0000199133
Cenchrus purpureus GWHAORA00000009 2 CH_cpu_97 8 17 0.0000000000024418
Dioscorea dumetorum contig558 2 CH_ddu_60 5 9 0.00000000509413
Digitaria exilis Dexi_CM05836_chr08A 2 CH_dex_134 5 6 0.00000000752041
Digitaria exilis Dexi_CM05836_chr01B 2 CH_dex_296 4 5 0.0000034726
Digitaria exilis Dexi_CM05836_chr01A 2 CH_dex_297 4 5 0.0000034726
Digitaria exilis Dexi_CM05836_chr05A 2 CH_dex_598 3 3 0.000381856
Digitaria exilis Dexi_CM05836_chrUA 2 CH_dex_599 3 3 0.000381856
Digitaria exilis Dexi_CM05836_chr08B 2 CH_dex_86 6 8 0.0000000000626557
Eragrostis curvula 2 2 CH_ecu_107 7 12 0.000000000000610601
Eragrostis curvula Contig544 2 CH_ecu_118 8 29 0.0000000000045283
Eragrostis curvula 2 2 CH_ecu_389 5 18 0.00000322202
Eragrostis curvula 3 2 CH_ecu_615 3 3 0.000178323
Eragrostis curvula 7 2 CH_ecu_710 4 16 0.000471451
Eragrostis curvula Contig8 2 CH_ecu_777 3 4 0.00071249
Elaeis guineensis EG5.1_Chr15 2 CH_egu_177 3 3 0.00012303
Elaeis guineensis EG5.1_Chr3 2 CH_egu_258 3 4 0.000491468
Elaeis guineensis EG5.1_Chr3 2 CH_egu_49 4 4 0.00000020981
Elaeis guineensis EG5.1_Chr5 2 CH_egu_65 4 5 0.00000104761
Glycine max Gm18 2 CH_gma_395 3 4 0.000145921
Glycine max Gm07 2 CH_gma_396 3 3 0.000145921
Glycine max Gm08 2 CH_gma_572 3 4 0.000583075
Glycine max Gm20 2 CH_gma_573 3 4 0.000583075
Hordeum vulgare chr5H 2 CH_hvu_248 3 3 0.0000225787
Lolium perenne Lp_chr3_0 2 CH_lpe_196 4 14 0.0000176869
Lolium perenne Lp_chr6_0 2 CH_lpe_93 5 13 0.0000000157324
Magnolia biondii Chr14 2 CH_mbi_111 5 11 0.00000000455955
Magnolia biondii Chr02 2 CH_mbi_121 7 80 0.00000001345
Magnolia biondii Chr05 2 CH_mbi_151 5 17 0.0000000608541
Miscanthus sinensis Chr08 2 CH_msi_392 3 3 0.000105013
Miscanthus sinensis Chr09 2 CH_msi_393 3 3 0.000105013
Oryza alta GWHAZTO00000024 2 CH_oal_126 5 11 0.000000021025
Oryza alta GWHAZTO00000013 2 CH_oal_149 4 4 0.000000054645
Oryza alta GWHAZTO00000001 2 CH_oal_264 6 64 0.00000271678
Oryza alta GWHAZTO00000013 2 CH_oal_612 3 4 0.000258088
Oryza alta GWHAZTO00000006 2 CH_oal_69 5 6 0.000000000274008
Oryza alta GWHAZTO00000017 2 CH_oal_752 3 5 0.000644805
Oryza alta GWHAZTO00000018 2 CH_oal_753 3 5 0.000644805
Oryza brachyantha 1 2 CH_obr_150 3 3 0.0000350309
Oryza brachyantha 12 2 CH_obr_208 3 4 0.000140019
Oryza sativa ssp. indica Chr1 2 CH_osaindica_346 3 5 0.000394946
Oryza sativa ssp. indica Chr1 2 CH_osaindica_39 6 8 0.000000000000888656
Oryza sativa Kitaake Chr1 2 CH_osak_181 4 5 0.000000244262
Oryza sativa Kitaake Chr1 2 CH_osak_282 3 3 0.0000469523
Oryza sativa Kitaake Chr12 2 CH_osak_428 3 5 0.000468763
Oryza sativa ssp. japonica chr01 2 CH_osa_191 3 3 0.0000480302
Oryza sativa ssp. japonica chr12 2 CH_osa_354 3 5 0.000479535
Oryza sativa ssp. japonica chr01 2 CH_osa_70 5 9 0.00000000623359
Oropetium thomaeum Chromosome_3 2 CH_oth_118 3 3 0.0000197629
Oropetium thomaeum Chromosome_2 2 CH_oth_164 3 4 0.0000790003
Phyllostachys edulis hic_scaffold_1 2 CH_ped_38 7 8 0.0000000000000154729
Phyllostachys edulis hic_scaffold_7 2 CH_ped_8 11 12 1.44266e-25
Panicum hallii Chr08 2 CH_pha_3 13 18 9.16789e-30
Panicum hallii Chr05 2 CH_pha_375 3 4 0.000421498
Panicum hallii Chr05 2 CH_pha_376 3 4 0.000421498
Populus trichocarpa Chr19 2 CH_ptr_122 5 6 0.00000000191646
Populus trichocarpa Chr05 2 CH_ptr_348 3 3 0.000138917
Populus trichocarpa Chr15 2 CH_ptr_480 3 4 0.000555013
Populus trichocarpa Chr16 2 CH_ptr_481 3 4 0.000555013
Sorghum bicolor Chr04 2 CH_sbi_258 3 3 0.0000550386
Sorghum bicolor Chr03 2 CH_sbi_259 3 3 0.0000550386
Sorghum bicolor Chr02 2 CH_sbi_358 3 4 0.000219964
Sorghum bicolor Chr03 2 CH_sbi_416 3 5 0.000549434
Secale cereale GWHASIY00000005 2 CH_sce_274 4 5 0.000000643685
Secale cereale GWHASIY00000004 2 CH_sce_543 3 3 0.000101084
Sequoiadendron giganteum chr4 2 CH_sgi_101 10 13 2.11866e-19
Sequoiadendron giganteum chr2 2 CH_sgi_1164 4 8 0.000160615
Sequoiadendron giganteum chr5 2 CH_sgi_1389 3 3 0.000856012
Sequoiadendron giganteum chr6 2 CH_sgi_1390 3 3 0.000856012
Sequoiadendron giganteum chr5 2 CH_sgi_162 8 10 0.00000000000000505832
Sequoiadendron giganteum chr10 2 CH_sgi_281 6 6 0.0000000000164672
Sequoiadendron giganteum chr2 2 CH_sgi_56 12 14 4.29633e-25
Sequoiadendron giganteum chr2 2 CH_sgi_60 13 20 8.99098e-25
Sequoiadendron giganteum chr3 2 CH_sgi_623 4 4 0.0000023145
Sequoiadendron giganteum chr1 2 CH_sgi_674 4 5 0.0000115474
Setaria italica scaffold_8 2 CH_sit_2 23 45 1.26401e-47
Setaria italica scaffold_5 2 CH_sit_378 3 3 0.000253271
Setaria italica scaffold_1 2 CH_sit_379 3 4 0.000253271
Solanum lycopersicum SL4.0ch05 2 CH_sly_105 5 6 0.000000000651948
Solanum lycopersicum SL4.0ch06 2 CH_sly_363 3 3 0.0000733288
Selaginella moellendorffii scaffold_2 2 CH_smo_60 3 3 0.0000126723
Selaginella moellendorffii scaffold_2 2 CH_smo_61 3 3 0.0000126723
Spirodela polyrhiza pseudo19 2 CH_spo_98 3 3 0.000020725
Saccharum spontaneum Chr3C 2 CH_ssp_1038 3 3 0.000382181
Saccharum spontaneum Chr4C 2 CH_ssp_503 4 6 0.0000093449
Saccharum spontaneum Chr3C 2 CH_ssp_754 5 30 0.000139612
Setaria viridis Chr_08 2 CH_svi_2 24 63 8.17246e-47
Setaria viridis Chr_05 2 CH_svi_378 3 3 0.000213977
Triticum aestivum Chr7B 2 CH_tae_1108 3 3 0.000158849
Triticum aestivum Chr3A 2 CH_tae_1109 3 3 0.000158849
Triticum dicoccoides 3A 2 CH_tdi_423 3 3 0.000108601
Triticum dicoccoides 6B 2 CH_tdi_517 3 4 0.000434025
Zoysia japonica ssp. nagirizaki Zjn_sc00008.1 2 CH_zjn_189 3 5 0.000332477

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001