Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.lipid degradation.phospholipase activities.phospholipase A2 activities.phospholipase A2 (pPLA2-II)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG02 | 1 | CH_aco_139 | 2 | 2 | 0.000497678 |
| Allium sativum | chr2 | 1 | CH_asa_98 | 4 | 4 | 0.000000000534327 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_95 | 3 | 3 | 0.0000000123118 |
| Amborella trichopoda | AmTr_v1.0_scaffold00126 | 1 | CH_atr_20 | 6 | 9 | 4.18651e-17 |
| Brachypodium distachyon | Bd4 | 1 | CH_bdi_116 | 3 | 3 | 0.00000125499 |
| Brachypodium distachyon | Bd3 | 1 | CH_bdi_92 | 5 | 52 | 0.000000221099 |
| Calamus simplicifolius | scaffold953 | 1 | CH_calsi_112 | 3 | 4 | 0.00000324427 |
| Ceratophyllum demersum | 3 | 1 | CH_cde_1 | 8 | 12 | 8.9743e-21 |
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_228 | 4 | 4 | 0.00000000897594 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_39 | 8 | 20 | 1.01757e-16 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_52 | 6 | 6 | 0.00000000000000285678 |
| Cenchrus purpureus | GWHAORA00000008 | 1 | CH_cpu_63 | 6 | 7 | 0.0000000000000199879 |
| Digitaria exilis | Dexi_CM05836_chr08B | 1 | CH_dex_190 | 4 | 6 | 0.000000123879 |
| Digitaria exilis | Dexi_CM05836_chr08B | 1 | CH_dex_342 | 3 | 3 | 0.0000141336 |
| Digitaria exilis | Dexi_CM05836_chr08A | 1 | CH_dex_548 | 3 | 6 | 0.000282287 |
| Digitaria exilis | Dexi_CM05836_chr06A | 1 | CH_dex_71 | 5 | 5 | 0.00000000000469673 |
| Digitaria exilis | Dexi_CM05836_chr06B | 1 | CH_dex_81 | 5 | 6 | 0.000000000028167 |
| Digitaria exilis | Dexi_CM05836_chr08A | 1 | CH_dex_87 | 6 | 19 | 0.0000000000698421 |
| Eragrostis curvula | 2 | 1 | CH_ecu_46 | 9 | 25 | 3.10883e-18 |
| Eragrostis curvula | 4 | 1 | CH_ecu_707 | 3 | 6 | 0.000411498 |
| Eragrostis curvula | Contig50 | 1 | CH_ecu_8 | 13 | 20 | 1.10249e-32 |
| Elaeis guineensis | p5_sc00068 | 1 | CH_egu_94 | 3 | 5 | 0.00000753539 |
| Glycine max | Gm14 | 1 | CH_gma_193 | 3 | 3 | 0.000000475419 |
| Glycine max | Gm07 | 1 | CH_gma_233 | 3 | 4 | 0.0000019014 |
| Glycine max | Gm17 | 1 | CH_gma_74 | 4 | 4 | 0.0000000000812049 |
| Lolium perenne | Lp_chr7_0.1 | 1 | CH_lpe_234 | 3 | 8 | 0.0000394554 |
| Magnolia biondii | Chr06 | 1 | CH_mbi_32 | 6 | 18 | 0.0000000000000031582 |
| Miscanthus sinensis | Chr13 | 1 | CH_msi_114 | 4 | 6 | 0.00000000727538 |
| Miscanthus sinensis | Chr07 | 1 | CH_msi_286 | 3 | 5 | 0.0000177211 |
| Oryza alta | GWHAZTO00000022 | 1 | CH_oal_312 | 3 | 6 | 0.0000138822 |
| Oryza brachyantha | 8 | 1 | CH_obr_90 | 3 | 3 | 0.000000299729 |
| Oryza sativa ssp. indica | Chr8 | 1 | CH_osaindica_114 | 3 | 3 | 0.000000224189 |
| Oryza sativa Kitaake | Chr8 | 1 | CH_osak_217 | 3 | 3 | 0.0000010455 |
| Oryza sativa Kitaake | Chr12 | 1 | CH_osak_275 | 3 | 7 | 0.0000365604 |
| Oropetium thomaeum | Chromosome_9 | 1 | CH_oth_43 | 4 | 8 | 0.00000000477014 |
| Phyllostachys edulis | hic_scaffold_22 | 1 | CH_ped_15 | 8 | 14 | 1.29532e-19 |
| Phyllostachys edulis | hic_scaffold_1 | 1 | CH_ped_89 | 6 | 45 | 0.00000000273482 |
| Panicum hallii | Chr06 | 1 | CH_pha_65 | 4 | 4 | 0.000000000420955 |
| Populus trichocarpa | Chr17 | 1 | CH_ptr_16 | 9 | 9 | 2.31072e-25 |
| Populus trichocarpa | Chr14 | 1 | CH_ptr_37 | 7 | 8 | 8.13034e-18 |
| Populus trichocarpa | Chr19 | 1 | CH_ptr_482 | 3 | 8 | 0.000566642 |
| Sorghum bicolor | Chr05 | 1 | CH_sbi_230 | 3 | 5 | 0.0000113536 |
| Sorghum bicolor | Chr07 | 1 | CH_sbi_80 | 4 | 4 | 0.000000000299898 |
| Secale cereale | GWHASIY00000007 | 1 | CH_sce_551 | 3 | 8 | 0.000118251 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_552 | 3 | 8 | 0.000118251 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_173 | 6 | 9 | 0.0000000000000140599 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_29 | 10 | 11 | 1.11356e-29 |
| Setaria italica | scaffold_8 | 1 | CH_sit_112 | 4 | 6 | 0.0000000120059 |
| Setaria italica | scaffold_6 | 1 | CH_sit_85 | 4 | 4 | 0.000000000800847 |
| Solanum lycopersicum | SL4.0ch04 | 1 | CH_sly_110 | 4 | 5 | 0.00000000100079 |
| Spirodela polyrhiza | pseudo0 | 1 | CH_spo_108 | 3 | 18 | 0.0000507939 |
| Saccharum spontaneum | Chr6C | 1 | CH_ssp_1098 | 3 | 9 | 0.000468609 |
| Saccharum spontaneum | Chr6D | 1 | CH_ssp_179 | 4 | 6 | 0.0000000319826 |
| Saccharum spontaneum | Chr6B | 1 | CH_ssp_378 | 4 | 13 | 0.00000152122 |
| Saccharum spontaneum | Chr2C | 1 | CH_ssp_467 | 3 | 3 | 0.00000558867 |
| Saccharum spontaneum | Chr6D | 1 | CH_ssp_952 | 3 | 8 | 0.000312499 |
| Setaria viridis | Chr_08 | 1 | CH_svi_237 | 3 | 5 | 0.0000148586 |
| Setaria viridis | Chr_06 | 1 | CH_svi_82 | 4 | 4 | 0.000000000426641 |
| Triticum aestivum | Chr7B | 1 | CH_tae_1294 | 3 | 7 | 0.000429761 |
| Triticum aestivum | Chr3B | 1 | CH_tae_1409 | 3 | 8 | 0.000687369 |
| Triticum aestivum | Chr7A | 1 | CH_tae_561 | 4 | 7 | 0.000000201051 |
| Triticum dicoccoides | 7A | 1 | CH_tdi_278 | 3 | 3 | 0.00000433029 |
| Triticum turgidum | chr7A | 1 | CH_ttu_229 | 4 | 7 | 0.000000131022 |
| Triticum turgidum | chr7B | 1 | CH_ttu_587 | 3 | 7 | 0.000279381 |
| Triticum turgidum | chr3B | 1 | CH_ttu_645 | 3 | 8 | 0.000446846 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00080.1 | 1 | CH_zjn_49 | 3 | 3 | 0.000000587161 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00015.1 | 1 | CH_zjn_61 | 3 | 4 | 0.00000234827 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00106.1 | 1 | CH_zjn_77 | 3 | 6 | 0.0000117377 |
| Zea mays B104 | scaffold1.2866 | 1 | CH_zma-b104_3 | 4 | 5 | 0.00000000042482 |
| Zea mays B73 | 2 | 1 | CH_zma_168 | 3 | 9 | 0.0000723871 |
| Zea mays B73 | 1 | 1 | CH_zma_40 | 4 | 5 | 0.000000000992448 |
| Ananas comosus | LG02 | 2 | CH_aco_139 | 2 | 2 | 0.000497678 |
| Allium sativum | chr2 | 2 | CH_asa_98 | 4 | 4 | 0.000000000534327 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_95 | 3 | 3 | 0.0000000123118 |
| Amborella trichopoda | AmTr_v1.0_scaffold00126 | 2 | CH_atr_20 | 6 | 9 | 4.18651e-17 |
| Brachypodium distachyon | Bd4 | 2 | CH_bdi_116 | 3 | 3 | 0.00000125499 |
| Brachypodium distachyon | Bd3 | 2 | CH_bdi_92 | 5 | 52 | 0.000000221099 |
| Calamus simplicifolius | scaffold953 | 2 | CH_calsi_112 | 3 | 4 | 0.00000324427 |
| Ceratophyllum demersum | 3 | 2 | CH_cde_1 | 8 | 12 | 8.9743e-21 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_228 | 4 | 4 | 0.00000000897594 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_39 | 8 | 20 | 1.01757e-16 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_52 | 6 | 6 | 0.00000000000000285678 |
| Cenchrus purpureus | GWHAORA00000008 | 2 | CH_cpu_63 | 6 | 7 | 0.0000000000000199879 |
| Digitaria exilis | Dexi_CM05836_chr08B | 2 | CH_dex_190 | 4 | 6 | 0.000000123879 |
| Digitaria exilis | Dexi_CM05836_chr08B | 2 | CH_dex_342 | 3 | 3 | 0.0000141336 |
| Digitaria exilis | Dexi_CM05836_chr08A | 2 | CH_dex_548 | 3 | 6 | 0.000282287 |
| Digitaria exilis | Dexi_CM05836_chr06A | 2 | CH_dex_71 | 5 | 5 | 0.00000000000469673 |
| Digitaria exilis | Dexi_CM05836_chr06B | 2 | CH_dex_81 | 5 | 6 | 0.000000000028167 |
| Digitaria exilis | Dexi_CM05836_chr08A | 2 | CH_dex_87 | 6 | 19 | 0.0000000000698421 |
| Eragrostis curvula | 2 | 2 | CH_ecu_46 | 9 | 25 | 3.10883e-18 |
| Eragrostis curvula | 4 | 2 | CH_ecu_707 | 3 | 6 | 0.000411498 |
| Eragrostis curvula | Contig50 | 2 | CH_ecu_8 | 13 | 20 | 1.10249e-32 |
| Elaeis guineensis | p5_sc00068 | 2 | CH_egu_94 | 3 | 5 | 0.00000753539 |
| Glycine max | Gm14 | 2 | CH_gma_193 | 3 | 3 | 0.000000475419 |
| Glycine max | Gm07 | 2 | CH_gma_233 | 3 | 4 | 0.0000019014 |
| Glycine max | Gm17 | 2 | CH_gma_74 | 4 | 4 | 0.0000000000812049 |
| Lolium perenne | Lp_chr7_0.1 | 2 | CH_lpe_234 | 3 | 8 | 0.0000394554 |
| Magnolia biondii | Chr06 | 2 | CH_mbi_32 | 6 | 18 | 0.0000000000000031582 |
| Miscanthus sinensis | Chr13 | 2 | CH_msi_114 | 4 | 6 | 0.00000000727538 |
| Miscanthus sinensis | Chr07 | 2 | CH_msi_286 | 3 | 5 | 0.0000177211 |
| Oryza alta | GWHAZTO00000022 | 2 | CH_oal_312 | 3 | 6 | 0.0000138822 |
| Oryza brachyantha | 8 | 2 | CH_obr_90 | 3 | 3 | 0.000000299729 |
| Oryza sativa ssp. indica | Chr8 | 2 | CH_osaindica_114 | 3 | 3 | 0.000000224189 |
| Oryza sativa Kitaake | Chr8 | 2 | CH_osak_217 | 3 | 3 | 0.0000010455 |
| Oryza sativa Kitaake | Chr12 | 2 | CH_osak_275 | 3 | 7 | 0.0000365604 |
| Oropetium thomaeum | Chromosome_9 | 2 | CH_oth_43 | 4 | 8 | 0.00000000477014 |
| Phyllostachys edulis | hic_scaffold_22 | 2 | CH_ped_15 | 8 | 14 | 1.29532e-19 |
| Phyllostachys edulis | hic_scaffold_1 | 2 | CH_ped_89 | 6 | 45 | 0.00000000273482 |
| Panicum hallii | Chr06 | 2 | CH_pha_65 | 4 | 4 | 0.000000000420955 |
| Populus trichocarpa | Chr17 | 2 | CH_ptr_16 | 9 | 9 | 2.31072e-25 |
| Populus trichocarpa | Chr14 | 2 | CH_ptr_37 | 7 | 8 | 8.13034e-18 |
| Populus trichocarpa | Chr19 | 2 | CH_ptr_482 | 3 | 8 | 0.000566642 |
| Sorghum bicolor | Chr05 | 2 | CH_sbi_230 | 3 | 5 | 0.0000113536 |
| Sorghum bicolor | Chr07 | 2 | CH_sbi_80 | 4 | 4 | 0.000000000299898 |
| Secale cereale | GWHASIY00000007 | 2 | CH_sce_551 | 3 | 8 | 0.000118251 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_552 | 3 | 8 | 0.000118251 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_173 | 6 | 9 | 0.0000000000000140599 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_29 | 10 | 11 | 1.11356e-29 |
| Setaria italica | scaffold_8 | 2 | CH_sit_112 | 4 | 6 | 0.0000000120059 |
| Setaria italica | scaffold_6 | 2 | CH_sit_85 | 4 | 4 | 0.000000000800847 |
| Solanum lycopersicum | SL4.0ch04 | 2 | CH_sly_110 | 4 | 5 | 0.00000000100079 |
| Spirodela polyrhiza | pseudo0 | 2 | CH_spo_108 | 3 | 18 | 0.0000507939 |
| Saccharum spontaneum | Chr6C | 2 | CH_ssp_1098 | 3 | 9 | 0.000468609 |
| Saccharum spontaneum | Chr6D | 2 | CH_ssp_179 | 4 | 6 | 0.0000000319826 |
| Saccharum spontaneum | Chr6B | 2 | CH_ssp_378 | 4 | 13 | 0.00000152122 |
| Saccharum spontaneum | Chr2C | 2 | CH_ssp_467 | 3 | 3 | 0.00000558867 |
| Saccharum spontaneum | Chr6D | 2 | CH_ssp_952 | 3 | 8 | 0.000312499 |
| Setaria viridis | Chr_08 | 2 | CH_svi_237 | 3 | 5 | 0.0000148586 |
| Setaria viridis | Chr_06 | 2 | CH_svi_82 | 4 | 4 | 0.000000000426641 |
| Triticum aestivum | Chr7B | 2 | CH_tae_1294 | 3 | 7 | 0.000429761 |
| Triticum aestivum | Chr3B | 2 | CH_tae_1409 | 3 | 8 | 0.000687369 |
| Triticum aestivum | Chr7A | 2 | CH_tae_561 | 4 | 7 | 0.000000201051 |
| Triticum dicoccoides | 7A | 2 | CH_tdi_278 | 3 | 3 | 0.00000433029 |
| Triticum turgidum | chr7A | 2 | CH_ttu_229 | 4 | 7 | 0.000000131022 |
| Triticum turgidum | chr7B | 2 | CH_ttu_587 | 3 | 7 | 0.000279381 |
| Triticum turgidum | chr3B | 2 | CH_ttu_645 | 3 | 8 | 0.000446846 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00080.1 | 2 | CH_zjn_49 | 3 | 3 | 0.000000587161 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00015.1 | 2 | CH_zjn_61 | 3 | 4 | 0.00000234827 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00106.1 | 2 | CH_zjn_77 | 3 | 6 | 0.0000117377 |
| Zea mays B104 | scaffold1.2866 | 2 | CH_zma-b104_3 | 4 | 5 | 0.00000000042482 |
| Zea mays B73 | 2 | 2 | CH_zma_168 | 3 | 9 | 0.0000723871 |
| Zea mays B73 | 1 | 2 | CH_zma_40 | 4 | 5 | 0.000000000992448 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |