Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol delta8-delta7 isomerase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_389 | 3 | 8 | 0.00000160514 |
| Cenchrus purpureus | GWHAORA00000007 | 1 | CH_cpu_390 | 3 | 8 | 0.00000160514 |
| Digitaria exilis | Dexi_CM05836_chr05B | 1 | CH_dex_108 | 4 | 11 | 0.00000000129295 |
| Digitaria exilis | Dexi_CM05836_chr05A | 1 | CH_dex_317 | 3 | 10 | 0.00000703337 |
| Eragrostis curvula | Contig25 | 1 | CH_ecu_369 | 3 | 12 | 0.00000198379 |
| Glycine max | Gm09 | 1 | CH_gma_123 | 3 | 3 | 0.00000000864398 |
| Miscanthus sinensis | Chr05 | 1 | CH_msi_201 | 3 | 11 | 0.00000102618 |
| Panicum hallii | Chr05 | 1 | CH_pha_147 | 3 | 9 | 0.000000425423 |
| Sorghum bicolor | Chr03 | 1 | CH_sbi_21 | 6 | 13 | 2.68382e-17 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_934 | 2 | 2 | 0.0000487151 |
| Setaria italica | scaffold_5 | 1 | CH_sit_167 | 3 | 9 | 0.000000424436 |
| Saccharum spontaneum | Chr3A | 1 | CH_ssp_303 | 3 | 4 | 0.000000563516 |
| Saccharum spontaneum | Chr3B | 1 | CH_ssp_520 | 3 | 9 | 0.0000118289 |
| Setaria viridis | Chr_05 | 1 | CH_svi_163 | 3 | 9 | 0.000000343002 |
| Triticum aestivum | Chr5B | 1 | CH_tae_529 | 3 | 3 | 0.000000115481 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_389 | 3 | 8 | 0.00000160514 |
| Cenchrus purpureus | GWHAORA00000007 | 2 | CH_cpu_390 | 3 | 8 | 0.00000160514 |
| Digitaria exilis | Dexi_CM05836_chr05B | 2 | CH_dex_108 | 4 | 11 | 0.00000000129295 |
| Digitaria exilis | Dexi_CM05836_chr05A | 2 | CH_dex_317 | 3 | 10 | 0.00000703337 |
| Eragrostis curvula | Contig25 | 2 | CH_ecu_369 | 3 | 12 | 0.00000198379 |
| Glycine max | Gm09 | 2 | CH_gma_123 | 3 | 3 | 0.00000000864398 |
| Miscanthus sinensis | Chr05 | 2 | CH_msi_201 | 3 | 11 | 0.00000102618 |
| Panicum hallii | Chr05 | 2 | CH_pha_147 | 3 | 9 | 0.000000425423 |
| Sorghum bicolor | Chr03 | 2 | CH_sbi_21 | 6 | 13 | 2.68382e-17 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_934 | 2 | 2 | 0.0000487151 |
| Setaria italica | scaffold_5 | 2 | CH_sit_167 | 3 | 9 | 0.000000424436 |
| Saccharum spontaneum | Chr3A | 2 | CH_ssp_303 | 3 | 4 | 0.000000563516 |
| Saccharum spontaneum | Chr3B | 2 | CH_ssp_520 | 3 | 9 | 0.0000118289 |
| Setaria viridis | Chr_05 | 2 | CH_svi_163 | 3 | 9 | 0.000000343002 |
| Triticum aestivum | Chr5B | 2 | CH_tae_529 | 3 | 3 | 0.000000115481 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |