Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.obtusifoliol 14-alpha demethylase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brachypodium distachyon | Bd3 | 1 | CH_bdi_118 | 3 | 4 | 0.00000127762 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_148 | 4 | 4 | 0.000000000161313 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_203 | 4 | 6 | 0.00000000241891 |
| Dioscorea dumetorum | contig760 | 1 | CH_ddu_287 | 2 | 5 | 0.000690822 |
| Eragrostis curvula | 1 | 1 | CH_ecu_812 | 2 | 2 | 0.000814222 |
| Eragrostis curvula | 2 | 1 | CH_ecu_813 | 2 | 2 | 0.000814222 |
| Oryza alta | GWHAZTO00000007 | 1 | CH_oal_824 | 2 | 2 | 0.00090681 |
| Oryza alta | GWHAZTO00000014 | 1 | CH_oal_825 | 2 | 2 | 0.00090681 |
| Oryza sativa ssp. indica | Chr5 | 1 | CH_osaindica_139 | 3 | 3 | 0.000000660557 |
| Oryza sativa Kitaake | Chr5 | 1 | CH_osak_191 | 3 | 3 | 0.000000399189 |
| Oryza sativa ssp. japonica | chr05 | 1 | CH_osa_128 | 3 | 3 | 0.00000035144 |
| Sorghum bicolor | Chr05 | 1 | CH_sbi_31 | 6 | 10 | 0.000000000000016425 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_443 | 3 | 4 | 0.0000363644 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_444 | 3 | 4 | 0.0000363644 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_933 | 2 | 2 | 0.0000487151 |
| Setaria italica | scaffold_8 | 1 | CH_sit_166 | 3 | 6 | 0.000000404234 |
| Saccharum spontaneum | Chr6A | 1 | CH_ssp_400 | 3 | 4 | 0.00000232225 |
| Saccharum spontaneum | Chr6C | 1 | CH_ssp_401 | 3 | 4 | 0.00000232225 |
| Setaria viridis | Chr_08 | 1 | CH_svi_181 | 3 | 8 | 0.000000914605 |
| Triticum aestivum | Chr5B | 1 | CH_tae_1050 | 3 | 5 | 0.000109237 |
| Triticum aestivum | Chr2B | 1 | CH_tae_1349 | 3 | 8 | 0.000611093 |
| Triticum aestivum | Chr4B | 1 | CH_tae_854 | 3 | 3 | 0.0000109313 |
| Triticum turgidum | chr2B | 1 | CH_ttu_516 | 3 | 5 | 0.00010453 |
| Brachypodium distachyon | Bd3 | 2 | CH_bdi_118 | 3 | 4 | 0.00000127762 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_148 | 4 | 4 | 0.000000000161313 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_203 | 4 | 6 | 0.00000000241891 |
| Dioscorea dumetorum | contig760 | 2 | CH_ddu_287 | 2 | 5 | 0.000690822 |
| Eragrostis curvula | 1 | 2 | CH_ecu_812 | 2 | 2 | 0.000814222 |
| Eragrostis curvula | 2 | 2 | CH_ecu_813 | 2 | 2 | 0.000814222 |
| Oryza alta | GWHAZTO00000007 | 2 | CH_oal_824 | 2 | 2 | 0.00090681 |
| Oryza alta | GWHAZTO00000014 | 2 | CH_oal_825 | 2 | 2 | 0.00090681 |
| Oryza sativa ssp. indica | Chr5 | 2 | CH_osaindica_139 | 3 | 3 | 0.000000660557 |
| Oryza sativa Kitaake | Chr5 | 2 | CH_osak_191 | 3 | 3 | 0.000000399189 |
| Oryza sativa ssp. japonica | chr05 | 2 | CH_osa_128 | 3 | 3 | 0.00000035144 |
| Sorghum bicolor | Chr05 | 2 | CH_sbi_31 | 6 | 10 | 0.000000000000016425 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_443 | 3 | 4 | 0.0000363644 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_444 | 3 | 4 | 0.0000363644 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_933 | 2 | 2 | 0.0000487151 |
| Setaria italica | scaffold_8 | 2 | CH_sit_166 | 3 | 6 | 0.000000404234 |
| Saccharum spontaneum | Chr6A | 2 | CH_ssp_400 | 3 | 4 | 0.00000232225 |
| Saccharum spontaneum | Chr6C | 2 | CH_ssp_401 | 3 | 4 | 0.00000232225 |
| Setaria viridis | Chr_08 | 2 | CH_svi_181 | 3 | 8 | 0.000000914605 |
| Triticum aestivum | Chr5B | 2 | CH_tae_1050 | 3 | 5 | 0.000109237 |
| Triticum aestivum | Chr2B | 2 | CH_tae_1349 | 3 | 8 | 0.000611093 |
| Triticum aestivum | Chr4B | 2 | CH_tae_854 | 3 | 3 | 0.0000109313 |
| Triticum turgidum | chr2B | 2 | CH_ttu_516 | 3 | 5 | 0.00010453 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |