Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.sphingolipid biosynthesis.serine C-palmitoyltransferase complex.small regulatory subunit ssSPT

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Digitaria exilis Dexi_CM05836_chr02A 1 CH_dex_583 2 2 0.000334202
Oryza sativa Kitaake Chr7 1 CH_osak_80 4 6 0.0000000000401208
Oryza sativa ssp. japonica chr07 1 CH_osa_113 3 5 0.000000167337
Oropetium thomaeum Chromosome_7 1 CH_oth_157 2 2 0.0000711845
Panicum hallii Chr04 1 CH_pha_326 2 2 0.000174332
Populus trichocarpa Chr02 1 CH_ptr_478 2 3 0.000520176
Sorghum bicolor Chr02 1 CH_sbi_391 2 2 0.000352009
Setaria italica scaffold_2 1 CH_sit_365 2 2 0.00017413
Setaria viridis Chr_02 1 CH_svi_365 2 2 0.000156535
Digitaria exilis Dexi_CM05836_chr02A 2 CH_dex_583 2 2 0.000334202
Oryza sativa Kitaake Chr7 2 CH_osak_80 4 6 0.0000000000401208
Oryza sativa ssp. japonica chr07 2 CH_osa_113 3 5 0.000000167337
Oropetium thomaeum Chromosome_7 2 CH_oth_157 2 2 0.0000711845
Panicum hallii Chr04 2 CH_pha_326 2 2 0.000174332
Populus trichocarpa Chr02 2 CH_ptr_478 2 3 0.000520176
Sorghum bicolor Chr02 2 CH_sbi_391 2 2 0.000352009
Setaria italica scaffold_2 2 CH_sit_365 2 2 0.00017413
Setaria viridis Chr_02 2 CH_svi_365 2 2 0.000156535

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001