Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.glycerolipid biosynthesis.phosphatidylcholine.phospho-base N-methyltransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aegilops tauschii 1D 1 CH_ata_242 2 2 0.000147725
Calamus simplicifolius scaffold116 1 CH_calsi_213 2 3 0.00020139
Cenchrus purpureus GWHAORA00000009 1 CH_cpu_796 2 2 0.000463707
Cenchrus purpureus GWHAORA00000007 1 CH_cpu_797 2 2 0.000463707
Digitaria exilis Dexi_CM05836_chr05A 1 CH_dex_644 2 2 0.000501303
Digitaria exilis Dexi_CM05836_chr05B 1 CH_dex_645 2 2 0.000501303
Eragrostis curvula Contig8 1 CH_ecu_504 2 2 0.0000387725
Elaeis guineensis EG5.1_Chr1 1 CH_egu_302 2 5 0.000947194
Glycine max Gm08 1 CH_gma_525 2 2 0.000379557
Miscanthus sinensis Chr05 1 CH_msi_648 2 3 0.000965919
Phyllostachys edulis hic_scaffold_14 1 CH_ped_420 3 16 0.000397959
Panicum hallii Chr05 1 CH_pha_325 2 2 0.000174332
Populus trichocarpa Chr12 1 CH_ptr_394 2 3 0.0001734
Sorghum bicolor Chr03 1 CH_sbi_390 2 2 0.000352009
Setaria italica scaffold_5 1 CH_sit_364 2 2 0.00017413
Saccharum spontaneum Chr3A 1 CH_ssp_1202 2 2 0.00066805
Saccharum spontaneum Chr3C 1 CH_ssp_1203 2 2 0.00066805
Setaria viridis Chr_05 1 CH_svi_364 2 2 0.000156535
Triticum aestivum Chr1D 1 CH_tae_472 3 3 0.000000029395
Zoysia japonica ssp. nagirizaki Zjn_sc00029.1 1 CH_zjn_179 2 2 0.000221971
Aegilops tauschii 1D 2 CH_ata_242 2 2 0.000147725
Calamus simplicifolius scaffold116 2 CH_calsi_213 2 3 0.00020139
Cenchrus purpureus GWHAORA00000009 2 CH_cpu_796 2 2 0.000463707
Cenchrus purpureus GWHAORA00000007 2 CH_cpu_797 2 2 0.000463707
Digitaria exilis Dexi_CM05836_chr05A 2 CH_dex_644 2 2 0.000501303
Digitaria exilis Dexi_CM05836_chr05B 2 CH_dex_645 2 2 0.000501303
Eragrostis curvula Contig8 2 CH_ecu_504 2 2 0.0000387725
Elaeis guineensis EG5.1_Chr1 2 CH_egu_302 2 5 0.000947194
Glycine max Gm08 2 CH_gma_525 2 2 0.000379557
Miscanthus sinensis Chr05 2 CH_msi_648 2 3 0.000965919
Phyllostachys edulis hic_scaffold_14 2 CH_ped_420 3 16 0.000397959
Panicum hallii Chr05 2 CH_pha_325 2 2 0.000174332
Populus trichocarpa Chr12 2 CH_ptr_394 2 3 0.0001734
Sorghum bicolor Chr03 2 CH_sbi_390 2 2 0.000352009
Setaria italica scaffold_5 2 CH_sit_364 2 2 0.00017413
Saccharum spontaneum Chr3A 2 CH_ssp_1202 2 2 0.00066805
Saccharum spontaneum Chr3C 2 CH_ssp_1203 2 2 0.00066805
Setaria viridis Chr_05 2 CH_svi_364 2 2 0.000156535
Triticum aestivum Chr1D 2 CH_tae_472 3 3 0.000000029395
Zoysia japonica ssp. nagirizaki Zjn_sc00029.1 2 CH_zjn_179 2 2 0.000221971

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001