Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.3-ketoacyl-CoA reductase (KCR)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr4 | 1 | CH_asa_253 | 3 | 5 | 0.00000126134 |
| Allium sativum | chr8 | 1 | CH_asa_80 | 4 | 5 | 0.0000000000611108 |
| Aegilops tauschii | 7D | 1 | CH_ata_170 | 3 | 4 | 0.0000140933 |
| Amborella trichopoda | AmTr_v1.0_scaffold00049 | 1 | CH_atr_77 | 3 | 4 | 0.000000037865 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_227 | 4 | 8 | 0.00000000846382 |
| Cenchrus purpureus | GWHAORA00000012 | 1 | CH_cpu_346 | 3 | 3 | 0.000000652251 |
| Digitaria exilis | Dexi_CM05836_chr04A | 1 | CH_dex_126 | 4 | 6 | 0.00000000513815 |
| Digitaria exilis | Dexi_CM05836_chr04B | 1 | CH_dex_263 | 3 | 3 | 0.00000136712 |
| Eragrostis curvula | 1 | 1 | CH_ecu_239 | 4 | 9 | 0.0000000400601 |
| Eragrostis curvula | 3 | 1 | CH_ecu_90 | 6 | 16 | 0.000000000000126219 |
| Elaeis guineensis | EG5.1_Chr10 | 1 | CH_egu_274 | 2 | 2 | 0.000568397 |
| Glycine max | Gm11 | 1 | CH_gma_445 | 2 | 2 | 0.000227734 |
| Glycine max | Gm18 | 1 | CH_gma_446 | 2 | 2 | 0.000227734 |
| Hordeum vulgare | chr7H | 1 | CH_hvu_101 | 4 | 5 | 0.00000000238586 |
| Oryza alta | GWHAZTO00000006 | 1 | CH_oal_93 | 4 | 10 | 0.0000000025508 |
| Oryza sativa ssp. indica | Chr6 | 1 | CH_osaindica_23 | 6 | 12 | 0.00000000000000160582 |
| Oryza sativa Kitaake | Chr6 | 1 | CH_osak_28 | 6 | 6 | 2.67002e-18 |
| Oryza sativa ssp. japonica | chr06 | 1 | CH_osa_14 | 6 | 9 | 6.52238e-17 |
| Oropetium thomaeum | Chromosome_2 | 1 | CH_oth_5 | 6 | 6 | 3.45576e-18 |
| Phyllostachys edulis | hic_scaffold_3 | 1 | CH_ped_291 | 3 | 8 | 0.0000507157 |
| Panicum hallii | Chr07 | 1 | CH_pha_169 | 3 | 4 | 0.0000011345 |
| Panicum hallii | Chr04 | 1 | CH_pha_196 | 3 | 6 | 0.00000567095 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_166 | 3 | 3 | 0.0000000501143 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_506 | 2 | 2 | 0.000578001 |
| Sorghum bicolor | Chr10 | 1 | CH_sbi_104 | 4 | 8 | 0.0000000053405 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_175 | 4 | 5 | 0.0000000150379 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_423 | 3 | 4 | 0.0000251642 |
| Setaria italica | scaffold_7 | 1 | CH_sit_222 | 3 | 5 | 0.00000424375 |
| Setaria italica | scaffold_4 | 1 | CH_sit_254 | 3 | 8 | 0.0000237536 |
| Spirodela polyrhiza | pseudo7 | 1 | CH_spo_5 | 10 | 12 | 1.59007e-28 |
| Saccharum spontaneum | Chr8D | 1 | CH_ssp_193 | 4 | 9 | 0.0000000544992 |
| Saccharum spontaneum | Chr8A | 1 | CH_ssp_388 | 3 | 3 | 0.00000172826 |
| Setaria viridis | Chr_07 | 1 | CH_svi_212 | 3 | 5 | 0.00000342957 |
| Setaria viridis | Chr_04 | 1 | CH_svi_243 | 3 | 8 | 0.0000191973 |
| Triticum aestivum | Chr7B | 1 | CH_tae_412 | 4 | 4 | 0.00000000621086 |
| Triticum aestivum | Chr7A | 1 | CH_tae_475 | 4 | 5 | 0.0000000310424 |
| Triticum aestivum | Chr7D | 1 | CH_tae_864 | 3 | 3 | 0.0000130199 |
| Triticum turgidum | chr7B | 1 | CH_ttu_138 | 4 | 4 | 0.00000000115858 |
| Triticum turgidum | chr7A | 1 | CH_ttu_169 | 4 | 5 | 0.00000000579127 |
| Vanilla planifolia | CM028152.1 | 1 | CH_vpl_324 | 2 | 2 | 0.000443328 |
| Allium sativum | chr4 | 2 | CH_asa_253 | 3 | 5 | 0.00000126134 |
| Allium sativum | chr8 | 2 | CH_asa_80 | 4 | 5 | 0.0000000000611108 |
| Aegilops tauschii | 7D | 2 | CH_ata_170 | 3 | 4 | 0.0000140933 |
| Amborella trichopoda | AmTr_v1.0_scaffold00049 | 2 | CH_atr_77 | 3 | 4 | 0.000000037865 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_227 | 4 | 8 | 0.00000000846382 |
| Cenchrus purpureus | GWHAORA00000012 | 2 | CH_cpu_346 | 3 | 3 | 0.000000652251 |
| Digitaria exilis | Dexi_CM05836_chr04A | 2 | CH_dex_126 | 4 | 6 | 0.00000000513815 |
| Digitaria exilis | Dexi_CM05836_chr04B | 2 | CH_dex_263 | 3 | 3 | 0.00000136712 |
| Eragrostis curvula | 1 | 2 | CH_ecu_239 | 4 | 9 | 0.0000000400601 |
| Eragrostis curvula | 3 | 2 | CH_ecu_90 | 6 | 16 | 0.000000000000126219 |
| Elaeis guineensis | EG5.1_Chr10 | 2 | CH_egu_274 | 2 | 2 | 0.000568397 |
| Glycine max | Gm11 | 2 | CH_gma_445 | 2 | 2 | 0.000227734 |
| Glycine max | Gm18 | 2 | CH_gma_446 | 2 | 2 | 0.000227734 |
| Hordeum vulgare | chr7H | 2 | CH_hvu_101 | 4 | 5 | 0.00000000238586 |
| Oryza alta | GWHAZTO00000006 | 2 | CH_oal_93 | 4 | 10 | 0.0000000025508 |
| Oryza sativa ssp. indica | Chr6 | 2 | CH_osaindica_23 | 6 | 12 | 0.00000000000000160582 |
| Oryza sativa Kitaake | Chr6 | 2 | CH_osak_28 | 6 | 6 | 2.67002e-18 |
| Oryza sativa ssp. japonica | chr06 | 2 | CH_osa_14 | 6 | 9 | 6.52238e-17 |
| Oropetium thomaeum | Chromosome_2 | 2 | CH_oth_5 | 6 | 6 | 3.45576e-18 |
| Phyllostachys edulis | hic_scaffold_3 | 2 | CH_ped_291 | 3 | 8 | 0.0000507157 |
| Panicum hallii | Chr07 | 2 | CH_pha_169 | 3 | 4 | 0.0000011345 |
| Panicum hallii | Chr04 | 2 | CH_pha_196 | 3 | 6 | 0.00000567095 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_166 | 3 | 3 | 0.0000000501143 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_506 | 2 | 2 | 0.000578001 |
| Sorghum bicolor | Chr10 | 2 | CH_sbi_104 | 4 | 8 | 0.0000000053405 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_175 | 4 | 5 | 0.0000000150379 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_423 | 3 | 4 | 0.0000251642 |
| Setaria italica | scaffold_7 | 2 | CH_sit_222 | 3 | 5 | 0.00000424375 |
| Setaria italica | scaffold_4 | 2 | CH_sit_254 | 3 | 8 | 0.0000237536 |
| Spirodela polyrhiza | pseudo7 | 2 | CH_spo_5 | 10 | 12 | 1.59007e-28 |
| Saccharum spontaneum | Chr8D | 2 | CH_ssp_193 | 4 | 9 | 0.0000000544992 |
| Saccharum spontaneum | Chr8A | 2 | CH_ssp_388 | 3 | 3 | 0.00000172826 |
| Setaria viridis | Chr_07 | 2 | CH_svi_212 | 3 | 5 | 0.00000342957 |
| Setaria viridis | Chr_04 | 2 | CH_svi_243 | 3 | 8 | 0.0000191973 |
| Triticum aestivum | Chr7B | 2 | CH_tae_412 | 4 | 4 | 0.00000000621086 |
| Triticum aestivum | Chr7A | 2 | CH_tae_475 | 4 | 5 | 0.0000000310424 |
| Triticum aestivum | Chr7D | 2 | CH_tae_864 | 3 | 3 | 0.0000130199 |
| Triticum turgidum | chr7B | 2 | CH_ttu_138 | 4 | 4 | 0.00000000115858 |
| Triticum turgidum | chr7A | 2 | CH_ttu_169 | 4 | 5 | 0.00000000579127 |
| Vanilla planifolia | CM028152.1 | 2 | CH_vpl_324 | 2 | 2 | 0.000443328 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |