Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.nucleotide sugar biosynthesis.GDP-L-fucose biosynthesis.de novo biosynthesis.GDP-L-fucose synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cenchrus purpureus GWHAORA00000012 1 CH_cpu_673 2 2 0.000185483
Cenchrus purpureus GWHAORA00000006 1 CH_cpu_825 2 3 0.000556429
Digitaria exilis Dexi_CM05836_chr04B 1 CH_dex_573 2 2 0.000334202
Digitaria exilis Dexi_CM05836_chr04A 1 CH_dex_574 2 2 0.000334202
Eragrostis curvula 3 1 CH_ecu_563 2 3 0.000116315
Oryza alta GWHAZTO00000018 1 CH_oal_506 2 2 0.000120908
Oryza alta GWHAZTO00000006 1 CH_oal_762 2 4 0.000725414
Oryza brachyantha 6 1 CH_obr_173 2 2 0.0000597336
Oryza sativa ssp. indica Chr6 1 CH_osaindica_218 2 2 0.0000516609
Oryza sativa Kitaake Chr6 1 CH_osak_303 2 2 0.0000562857
Oryza sativa ssp. japonica chr06 1 CH_osa_211 2 2 0.0000528123
Oropetium thomaeum Chromosome_2 1 CH_oth_184 2 3 0.000213546
Phyllostachys edulis hic_scaffold_8 1 CH_ped_332 2 2 0.000122237
Panicum hallii Chr04 1 CH_pha_238 2 2 0.0000581108
Sorghum bicolor Chr10 1 CH_sbi_277 2 2 0.0000586682
Setaria italica scaffold_4 1 CH_sit_286 2 2 0.0000580434
Saccharum spontaneum Chr8B 1 CH_ssp_1004 2 2 0.000357884
Saccharum spontaneum Chr8D 1 CH_ssp_1005 2 2 0.000357884
Setaria viridis Chr_04 1 CH_svi_271 2 2 0.0000521785
Zoysia japonica ssp. nagirizaki Zjn_sc00008.1 1 CH_zjn_143 2 2 0.000110986
Cenchrus purpureus GWHAORA00000012 2 CH_cpu_673 2 2 0.000185483
Cenchrus purpureus GWHAORA00000006 2 CH_cpu_825 2 3 0.000556429
Digitaria exilis Dexi_CM05836_chr04B 2 CH_dex_573 2 2 0.000334202
Digitaria exilis Dexi_CM05836_chr04A 2 CH_dex_574 2 2 0.000334202
Eragrostis curvula 3 2 CH_ecu_563 2 3 0.000116315
Oryza alta GWHAZTO00000018 2 CH_oal_506 2 2 0.000120908
Oryza alta GWHAZTO00000006 2 CH_oal_762 2 4 0.000725414
Oryza brachyantha 6 2 CH_obr_173 2 2 0.0000597336
Oryza sativa ssp. indica Chr6 2 CH_osaindica_218 2 2 0.0000516609
Oryza sativa Kitaake Chr6 2 CH_osak_303 2 2 0.0000562857
Oryza sativa ssp. japonica chr06 2 CH_osa_211 2 2 0.0000528123
Oropetium thomaeum Chromosome_2 2 CH_oth_184 2 3 0.000213546
Phyllostachys edulis hic_scaffold_8 2 CH_ped_332 2 2 0.000122237
Panicum hallii Chr04 2 CH_pha_238 2 2 0.0000581108
Sorghum bicolor Chr10 2 CH_sbi_277 2 2 0.0000586682
Setaria italica scaffold_4 2 CH_sit_286 2 2 0.0000580434
Saccharum spontaneum Chr8B 2 CH_ssp_1004 2 2 0.000357884
Saccharum spontaneum Chr8D 2 CH_ssp_1005 2 2 0.000357884
Setaria viridis Chr_04 2 CH_svi_271 2 2 0.0000521785
Zoysia japonica ssp. nagirizaki Zjn_sc00008.1 2 CH_zjn_143 2 2 0.000110986

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001