Functional clusters
Information
- Type MapMan
- Description Multi-process regulation.calcium-dependent signalling.SnRK2-interacting calcium sensor activities.SRC1-clade calcium sensor
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 1 | CH_atr_205 | 2 | 2 | 0.0000794407 |
| Cenchrus purpureus | GWHAORA00000003 | 1 | CH_cpu_149 | 5 | 28 | 0.000000000169354 |
| Dioscorea dumetorum | contig468 | 1 | CH_ddu_230 | 2 | 2 | 0.000207268 |
| Elaeis guineensis | EG5.1_Chr2 | 1 | CH_egu_332 | 2 | 2 | 0.000947329 |
| Glycine max | Gm18 | 1 | CH_gma_566 | 2 | 2 | 0.000569336 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_391 | 2 | 3 | 0.00036524 |
| Lolium perenne | Lp_chr5_0 | 1 | CH_lpe_83 | 3 | 4 | 0.00000000619882 |
| Magnolia biondii | Chr13 | 1 | CH_mbi_258 | 3 | 8 | 0.00000693128 |
| Miscanthus sinensis | Chr07 | 1 | CH_msi_171 | 3 | 3 | 0.000000256604 |
| Oryza alta | GWHAZTO00000009 | 1 | CH_oal_36 | 5 | 14 | 0.00000000000114333 |
| Oryza brachyantha | 9 | 1 | CH_obr_20 | 5 | 7 | 0.0000000000000320835 |
| Oryza sativa ssp. indica | Chr9 | 1 | CH_osaindica_119 | 3 | 5 | 0.000000320227 |
| Oryza sativa Kitaake | Chr9 | 1 | CH_osak_60 | 5 | 10 | 0.000000000000398276 |
| Oryza sativa ssp. japonica | chr09 | 1 | CH_osa_28 | 5 | 12 | 0.000000000000970061 |
| Phyllostachys edulis | hic_scaffold_18 | 1 | CH_ped_140 | 3 | 3 | 0.00000013946 |
| Panicum hallii | Chr06 | 1 | CH_pha_371 | 2 | 2 | 0.000348665 |
| Populus trichocarpa | Chr02 | 1 | CH_ptr_17 | 8 | 9 | 2.75103e-25 |
| Sorghum bicolor | Chr07 | 1 | CH_sbi_205 | 3 | 8 | 0.00000289027 |
| Setaria italica | scaffold_6 | 1 | CH_sit_154 | 3 | 4 | 0.000000202133 |
| Spirodela polyrhiza | pseudo12 | 1 | CH_spo_17 | 5 | 5 | 0.0000000000000048574 |
| Saccharum spontaneum | Chr6B | 1 | CH_ssp_138 | 4 | 8 | 0.00000000678468 |
| Saccharum spontaneum | Chr6A | 1 | CH_ssp_517 | 3 | 6 | 0.000011608 |
| Saccharum spontaneum | Chr6D | 1 | CH_ssp_99 | 5 | 19 | 0.000000000174564 |
| Setaria viridis | Chr_06 | 1 | CH_svi_155 | 3 | 4 | 0.000000163349 |
| Triticum aestivum | Chr5A | 1 | CH_tae_583 | 3 | 4 | 0.000000251943 |
| Triticum dicoccoides | 5A | 1 | CH_tdi_209 | 3 | 5 | 0.000000462583 |
| Vanilla planifolia | CM028158.1 | 1 | CH_vpl_20 | 4 | 5 | 0.0000000000907633 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 2 | CH_atr_205 | 2 | 2 | 0.0000794407 |
| Cenchrus purpureus | GWHAORA00000003 | 2 | CH_cpu_149 | 5 | 28 | 0.000000000169354 |
| Dioscorea dumetorum | contig468 | 2 | CH_ddu_230 | 2 | 2 | 0.000207268 |
| Elaeis guineensis | EG5.1_Chr2 | 2 | CH_egu_332 | 2 | 2 | 0.000947329 |
| Glycine max | Gm18 | 2 | CH_gma_566 | 2 | 2 | 0.000569336 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_391 | 2 | 3 | 0.00036524 |
| Lolium perenne | Lp_chr5_0 | 2 | CH_lpe_83 | 3 | 4 | 0.00000000619882 |
| Magnolia biondii | Chr13 | 2 | CH_mbi_258 | 3 | 8 | 0.00000693128 |
| Miscanthus sinensis | Chr07 | 2 | CH_msi_171 | 3 | 3 | 0.000000256604 |
| Oryza alta | GWHAZTO00000009 | 2 | CH_oal_36 | 5 | 14 | 0.00000000000114333 |
| Oryza brachyantha | 9 | 2 | CH_obr_20 | 5 | 7 | 0.0000000000000320835 |
| Oryza sativa ssp. indica | Chr9 | 2 | CH_osaindica_119 | 3 | 5 | 0.000000320227 |
| Oryza sativa Kitaake | Chr9 | 2 | CH_osak_60 | 5 | 10 | 0.000000000000398276 |
| Oryza sativa ssp. japonica | chr09 | 2 | CH_osa_28 | 5 | 12 | 0.000000000000970061 |
| Phyllostachys edulis | hic_scaffold_18 | 2 | CH_ped_140 | 3 | 3 | 0.00000013946 |
| Panicum hallii | Chr06 | 2 | CH_pha_371 | 2 | 2 | 0.000348665 |
| Populus trichocarpa | Chr02 | 2 | CH_ptr_17 | 8 | 9 | 2.75103e-25 |
| Sorghum bicolor | Chr07 | 2 | CH_sbi_205 | 3 | 8 | 0.00000289027 |
| Setaria italica | scaffold_6 | 2 | CH_sit_154 | 3 | 4 | 0.000000202133 |
| Spirodela polyrhiza | pseudo12 | 2 | CH_spo_17 | 5 | 5 | 0.0000000000000048574 |
| Saccharum spontaneum | Chr6B | 2 | CH_ssp_138 | 4 | 8 | 0.00000000678468 |
| Saccharum spontaneum | Chr6A | 2 | CH_ssp_517 | 3 | 6 | 0.000011608 |
| Saccharum spontaneum | Chr6D | 2 | CH_ssp_99 | 5 | 19 | 0.000000000174564 |
| Setaria viridis | Chr_06 | 2 | CH_svi_155 | 3 | 4 | 0.000000163349 |
| Triticum aestivum | Chr5A | 2 | CH_tae_583 | 3 | 4 | 0.000000251943 |
| Triticum dicoccoides | 5A | 2 | CH_tdi_209 | 3 | 5 | 0.000000462583 |
| Vanilla planifolia | CM028158.1 | 2 | CH_vpl_20 | 4 | 5 | 0.0000000000907633 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |