Functional clusters
Information
- Type MapMan
- Description External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate oxidase (SOX)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_05 | 1 | CH_aof_16 | 3 | 5 | 0.0000000857079 |
| Allium sativum | chr3 | 1 | CH_asa_116 | 3 | 3 | 0.00000000225282 |
| Aegilops tauschii | 5D | 1 | CH_ata_37 | 4 | 5 | 0.00000000000895515 |
| Brachypodium distachyon | Bd4 | 1 | CH_bdi_239 | 2 | 2 | 0.000185002 |
| Calamus simplicifolius | scaffold453 | 1 | CH_calsi_3 | 6 | 8 | 6.01426e-18 |
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_123 | 4 | 4 | 0.0000000000292491 |
| Digitaria exilis | Dexi_CM05836_chr01A | 1 | CH_dex_24 | 7 | 14 | 1.89542e-17 |
| Digitaria exilis | Dexi_CM05836_chr01B | 1 | CH_dex_271 | 3 | 3 | 0.00000162346 |
| Eragrostis curvula | 3 | 1 | CH_ecu_663 | 2 | 3 | 0.000348941 |
| Oryza alta | GWHAZTO00000021 | 1 | CH_oal_621 | 2 | 2 | 0.00030227 |
| Oropetium thomaeum | Chromosome_2 | 1 | CH_oth_194 | 2 | 2 | 0.000213554 |
| Panicum hallii | Chr05 | 1 | CH_pha_134 | 3 | 4 | 0.000000202603 |
| Panicum hallii | Chr02 | 1 | CH_pha_394 | 2 | 2 | 0.000581108 |
| Sorghum bicolor | Chr02 | 1 | CH_sbi_434 | 2 | 2 | 0.000880023 |
| Sorghum bicolor | Chr03 | 1 | CH_sbi_435 | 2 | 2 | 0.000880023 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_186 | 3 | 3 | 0.0000000310941 |
| Setaria italica | scaffold_5 | 1 | CH_sit_120 | 3 | 3 | 0.0000000202148 |
| Saccharum spontaneum | Chr3B | 1 | CH_ssp_440 | 3 | 5 | 0.00000388425 |
| Setaria viridis | Chr_05 | 1 | CH_svi_111 | 3 | 3 | 0.000000016336 |
| Triticum aestivum | Chr5B | 1 | CH_tae_258 | 4 | 5 | 0.0000000000486032 |
| Triticum aestivum | Chr5A | 1 | CH_tae_527 | 3 | 3 | 0.000000115481 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_163 | 3 | 3 | 0.0000000462638 |
| Triticum dicoccoides | 5A | 1 | CH_tdi_571 | 2 | 2 | 0.000623386 |
| Triticum turgidum | chr5B | 1 | CH_ttu_224 | 3 | 4 | 0.000000117209 |
| Triticum turgidum | chr5A | 1 | CH_ttu_652 | 2 | 2 | 0.000468801 |
| Asparagus officinalis | AsparagusV1_05 | 2 | CH_aof_16 | 3 | 5 | 0.0000000857079 |
| Allium sativum | chr3 | 2 | CH_asa_116 | 3 | 3 | 0.00000000225282 |
| Aegilops tauschii | 5D | 2 | CH_ata_37 | 4 | 5 | 0.00000000000895515 |
| Brachypodium distachyon | Bd4 | 2 | CH_bdi_239 | 2 | 2 | 0.000185002 |
| Calamus simplicifolius | scaffold453 | 2 | CH_calsi_3 | 6 | 8 | 6.01426e-18 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_123 | 4 | 4 | 0.0000000000292491 |
| Digitaria exilis | Dexi_CM05836_chr01A | 2 | CH_dex_24 | 7 | 14 | 1.89542e-17 |
| Digitaria exilis | Dexi_CM05836_chr01B | 2 | CH_dex_271 | 3 | 3 | 0.00000162346 |
| Eragrostis curvula | 3 | 2 | CH_ecu_663 | 2 | 3 | 0.000348941 |
| Oryza alta | GWHAZTO00000021 | 2 | CH_oal_621 | 2 | 2 | 0.00030227 |
| Oropetium thomaeum | Chromosome_2 | 2 | CH_oth_194 | 2 | 2 | 0.000213554 |
| Panicum hallii | Chr05 | 2 | CH_pha_134 | 3 | 4 | 0.000000202603 |
| Panicum hallii | Chr02 | 2 | CH_pha_394 | 2 | 2 | 0.000581108 |
| Sorghum bicolor | Chr02 | 2 | CH_sbi_434 | 2 | 2 | 0.000880023 |
| Sorghum bicolor | Chr03 | 2 | CH_sbi_435 | 2 | 2 | 0.000880023 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_186 | 3 | 3 | 0.0000000310941 |
| Setaria italica | scaffold_5 | 2 | CH_sit_120 | 3 | 3 | 0.0000000202148 |
| Saccharum spontaneum | Chr3B | 2 | CH_ssp_440 | 3 | 5 | 0.00000388425 |
| Setaria viridis | Chr_05 | 2 | CH_svi_111 | 3 | 3 | 0.000000016336 |
| Triticum aestivum | Chr5B | 2 | CH_tae_258 | 4 | 5 | 0.0000000000486032 |
| Triticum aestivum | Chr5A | 2 | CH_tae_527 | 3 | 3 | 0.000000115481 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_163 | 3 | 3 | 0.0000000462638 |
| Triticum dicoccoides | 5A | 2 | CH_tdi_571 | 2 | 2 | 0.000623386 |
| Triticum turgidum | chr5B | 2 | CH_ttu_224 | 3 | 4 | 0.000000117209 |
| Triticum turgidum | chr5A | 2 | CH_ttu_652 | 2 | 2 | 0.000468801 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |