Functional clusters
Information
- Type MapMan
- Description Nutrient uptake.metal homeostasis.iron.regulation.bHLH-IVa-class iron homeostasis regulator
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr3 | 1 | CH_asa_338 | 3 | 11 | 0.0000208007 |
| Aegilops tauschii | 4D | 1 | CH_ata_180 | 3 | 8 | 0.0000244232 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_160 | 3 | 8 | 0.000000689338 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_83 | 3 | 3 | 0.00000011409 |
| Calamus simplicifolius | scaffold35 | 1 | CH_calsi_324 | 2 | 2 | 0.000671321 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_441 | 3 | 3 | 0.00000419304 |
| Cenchrus purpureus | GWHAORA00000011 | 1 | CH_cpu_48 | 6 | 7 | 0.0000000000000013161 |
| Cenchrus purpureus | GWHAORA00000012 | 1 | CH_cpu_712 | 3 | 8 | 0.000234466 |
| Dioscorea dumetorum | contig119 | 1 | CH_ddu_219 | 2 | 2 | 0.000207268 |
| Digitaria exilis | Dexi_CM05836_chr09B | 1 | CH_dex_257 | 3 | 3 | 0.00000113927 |
| Digitaria exilis | Dexi_CM05836_chr09A | 1 | CH_dex_258 | 3 | 3 | 0.00000113927 |
| Eragrostis curvula | 5 | 1 | CH_ecu_91 | 6 | 20 | 0.000000000000130906 |
| Elaeis guineensis | EG5.1_Chr1 | 1 | CH_egu_9 | 5 | 6 | 0.000000000000456688 |
| Glycine max | Gm13 | 1 | CH_gma_285 | 3 | 3 | 0.0000129314 |
| Glycine max | Gm17 | 1 | CH_gma_286 | 3 | 3 | 0.0000129314 |
| Glycine max | Gm01 | 1 | CH_gma_287 | 3 | 3 | 0.0000129314 |
| Glycine max | Gm05 | 1 | CH_gma_288 | 3 | 3 | 0.0000129314 |
| Glycine max | Gm07 | 1 | CH_gma_289 | 3 | 3 | 0.0000129314 |
| Glycine max | Gm08 | 1 | CH_gma_290 | 3 | 3 | 0.0000129314 |
| Magnolia biondii | Chr16 | 1 | CH_mbi_458 | 2 | 2 | 0.000145698 |
| Panicum hallii | Chr09 | 1 | CH_pha_142 | 3 | 3 | 0.000000283665 |
| Sorghum bicolor | Chr01 | 1 | CH_sbi_206 | 3 | 5 | 0.00000289053 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_125 | 5 | 11 | 0.000000000499965 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_239 | 4 | 8 | 0.000000175252 |
| Secale cereale | GWHASIY00000007 | 1 | CH_sce_64 | 5 | 5 | 0.00000000000108454 |
| Setaria italica | scaffold_9 | 1 | CH_sit_188 | 3 | 3 | 0.000000833859 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_154 | 3 | 3 | 0.000000103353 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_547 | 2 | 2 | 0.000880411 |
| Saccharum spontaneum | Chr1A | 1 | CH_ssp_158 | 4 | 9 | 0.0000000156988 |
| Saccharum spontaneum | Chr1B | 1 | CH_ssp_516 | 4 | 40 | 0.0000113353 |
| Setaria viridis | Chr_09 | 1 | CH_svi_178 | 3 | 3 | 0.000000673859 |
| Triticum aestivum | Chr5B | 1 | CH_tae_247 | 5 | 7 | 0.0000000000264217 |
| Triticum aestivum | Chr4B | 1 | CH_tae_312 | 5 | 10 | 0.000000000316747 |
| Triticum aestivum | Chr4D | 1 | CH_tae_487 | 4 | 6 | 0.0000000480408 |
| Triticum aestivum | Chr4B | 1 | CH_tae_828 | 3 | 3 | 0.00000796816 |
| Triticum turgidum | chr4B | 1 | CH_ttu_108 | 5 | 11 | 0.000000000111085 |
| Triticum turgidum | chr4B | 1 | CH_ttu_337 | 3 | 3 | 0.00000259485 |
| Triticum turgidum | chr5B | 1 | CH_ttu_575 | 3 | 9 | 0.00021764 |
| Zea mays B73 | 1 | 1 | CH_zma_127 | 3 | 6 | 0.0000172453 |
| Allium sativum | chr3 | 2 | CH_asa_338 | 3 | 11 | 0.0000208007 |
| Aegilops tauschii | 4D | 2 | CH_ata_180 | 3 | 8 | 0.0000244232 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_160 | 3 | 8 | 0.000000689338 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_83 | 3 | 3 | 0.00000011409 |
| Calamus simplicifolius | scaffold35 | 2 | CH_calsi_324 | 2 | 2 | 0.000671321 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_441 | 3 | 3 | 0.00000419304 |
| Cenchrus purpureus | GWHAORA00000011 | 2 | CH_cpu_48 | 6 | 7 | 0.0000000000000013161 |
| Cenchrus purpureus | GWHAORA00000012 | 2 | CH_cpu_712 | 3 | 8 | 0.000234466 |
| Dioscorea dumetorum | contig119 | 2 | CH_ddu_219 | 2 | 2 | 0.000207268 |
| Digitaria exilis | Dexi_CM05836_chr09B | 2 | CH_dex_257 | 3 | 3 | 0.00000113927 |
| Digitaria exilis | Dexi_CM05836_chr09A | 2 | CH_dex_258 | 3 | 3 | 0.00000113927 |
| Eragrostis curvula | 5 | 2 | CH_ecu_91 | 6 | 20 | 0.000000000000130906 |
| Elaeis guineensis | EG5.1_Chr1 | 2 | CH_egu_9 | 5 | 6 | 0.000000000000456688 |
| Glycine max | Gm13 | 2 | CH_gma_285 | 3 | 3 | 0.0000129314 |
| Glycine max | Gm17 | 2 | CH_gma_286 | 3 | 3 | 0.0000129314 |
| Glycine max | Gm01 | 2 | CH_gma_287 | 3 | 3 | 0.0000129314 |
| Glycine max | Gm05 | 2 | CH_gma_288 | 3 | 3 | 0.0000129314 |
| Glycine max | Gm07 | 2 | CH_gma_289 | 3 | 3 | 0.0000129314 |
| Glycine max | Gm08 | 2 | CH_gma_290 | 3 | 3 | 0.0000129314 |
| Magnolia biondii | Chr16 | 2 | CH_mbi_458 | 2 | 2 | 0.000145698 |
| Panicum hallii | Chr09 | 2 | CH_pha_142 | 3 | 3 | 0.000000283665 |
| Sorghum bicolor | Chr01 | 2 | CH_sbi_206 | 3 | 5 | 0.00000289053 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_125 | 5 | 11 | 0.000000000499965 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_239 | 4 | 8 | 0.000000175252 |
| Secale cereale | GWHASIY00000007 | 2 | CH_sce_64 | 5 | 5 | 0.00000000000108454 |
| Setaria italica | scaffold_9 | 2 | CH_sit_188 | 3 | 3 | 0.000000833859 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_154 | 3 | 3 | 0.000000103353 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_547 | 2 | 2 | 0.000880411 |
| Saccharum spontaneum | Chr1A | 2 | CH_ssp_158 | 4 | 9 | 0.0000000156988 |
| Saccharum spontaneum | Chr1B | 2 | CH_ssp_516 | 4 | 40 | 0.0000113353 |
| Setaria viridis | Chr_09 | 2 | CH_svi_178 | 3 | 3 | 0.000000673859 |
| Triticum aestivum | Chr5B | 2 | CH_tae_247 | 5 | 7 | 0.0000000000264217 |
| Triticum aestivum | Chr4B | 2 | CH_tae_312 | 5 | 10 | 0.000000000316747 |
| Triticum aestivum | Chr4D | 2 | CH_tae_487 | 4 | 6 | 0.0000000480408 |
| Triticum aestivum | Chr4B | 2 | CH_tae_828 | 3 | 3 | 0.00000796816 |
| Triticum turgidum | chr4B | 2 | CH_ttu_108 | 5 | 11 | 0.000000000111085 |
| Triticum turgidum | chr4B | 2 | CH_ttu_337 | 3 | 3 | 0.00000259485 |
| Triticum turgidum | chr5B | 2 | CH_ttu_575 | 3 | 9 | 0.00021764 |
| Zea mays B73 | 1 | 2 | CH_zma_127 | 3 | 6 | 0.0000172453 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |