Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.BART superfamily.AEC family.auxin transporter (PILS)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_402 | 2 | 2 | 0.000601633 |
| Eragrostis curvula | 3 | 1 | CH_ecu_136 | 5 | 17 | 0.000000000082945 |
| Glycine max | Gm16 | 1 | CH_gma_142 | 4 | 7 | 0.000000027797 |
| Lolium perenne | Lp_chr5_0 | 1 | CH_lpe_114 | 3 | 3 | 0.0000000867849 |
| Magnolia biondii | Chr01 | 1 | CH_mbi_154 | 3 | 3 | 0.0000000707617 |
| Miscanthus sinensis | Chr04 | 1 | CH_msi_204 | 3 | 4 | 0.0000010263 |
| Oryza brachyantha | 9 | 1 | CH_obr_316 | 2 | 2 | 0.000896004 |
| Oryza sativa Kitaake | Chr9 | 1 | CH_osak_219 | 3 | 4 | 0.00000106436 |
| Oryza sativa ssp. japonica | chr09 | 1 | CH_osa_386 | 2 | 2 | 0.000792184 |
| Sorghum bicolor | Chr02 | 1 | CH_sbi_155 | 3 | 3 | 0.000000289133 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_325 | 4 | 4 | 0.000000000248 |
| Setaria italica | scaffold_2 | 1 | CH_sit_194 | 3 | 4 | 0.00000113187 |
| Saccharum spontaneum | Chr2B | 1 | CH_ssp_260 | 3 | 3 | 0.000000244211 |
| Setaria viridis | Chr_02 | 1 | CH_svi_148 | 3 | 3 | 0.00000014294 |
| Vanilla planifolia | CM028161.1 | 1 | CH_vpl_53 | 4 | 12 | 0.000000197316 |
| Vanilla planifolia | CM028161.1 | 1 | CH_vpl_89 | 3 | 4 | 0.00000540364 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_402 | 2 | 2 | 0.000601633 |
| Eragrostis curvula | 3 | 2 | CH_ecu_136 | 5 | 17 | 0.000000000082945 |
| Glycine max | Gm16 | 2 | CH_gma_142 | 4 | 7 | 0.000000027797 |
| Lolium perenne | Lp_chr5_0 | 2 | CH_lpe_114 | 3 | 3 | 0.0000000867849 |
| Magnolia biondii | Chr01 | 2 | CH_mbi_154 | 3 | 3 | 0.0000000707617 |
| Miscanthus sinensis | Chr04 | 2 | CH_msi_204 | 3 | 4 | 0.0000010263 |
| Oryza brachyantha | 9 | 2 | CH_obr_316 | 2 | 2 | 0.000896004 |
| Oryza sativa Kitaake | Chr9 | 2 | CH_osak_219 | 3 | 4 | 0.00000106436 |
| Oryza sativa ssp. japonica | chr09 | 2 | CH_osa_386 | 2 | 2 | 0.000792184 |
| Sorghum bicolor | Chr02 | 2 | CH_sbi_155 | 3 | 3 | 0.000000289133 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_325 | 4 | 4 | 0.000000000248 |
| Setaria italica | scaffold_2 | 2 | CH_sit_194 | 3 | 4 | 0.00000113187 |
| Saccharum spontaneum | Chr2B | 2 | CH_ssp_260 | 3 | 3 | 0.000000244211 |
| Setaria viridis | Chr_02 | 2 | CH_svi_148 | 3 | 3 | 0.00000014294 |
| Vanilla planifolia | CM028161.1 | 2 | CH_vpl_53 | 4 | 12 | 0.000000197316 |
| Vanilla planifolia | CM028161.1 | 2 | CH_vpl_89 | 3 | 4 | 0.00000540364 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |