Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (DTX)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG05 1 CH_aco_63 3 3 0.000067548
Asparagus officinalis AsparagusV1_07 1 CH_aof_146 3 5 0.000250355
Allium sativum chr8 1 CH_asa_158 5 9 0.0000000221295
Allium sativum chr4 1 CH_asa_316 4 8 0.00000991414
Allium sativum chr8 1 CH_asa_756 3 4 0.000451173
Allium sativum chr8 1 CH_asa_79 6 10 0.0000000000450253
Aegilops tauschii 3D 1 CH_ata_179 4 9 0.000021886
Arabidopsis thaliana Chr1 1 CH_ath_146 4 6 0.000000264152
Arabidopsis thaliana Chr1 1 CH_ath_238 4 17 0.0000416579
Arabidopsis thaliana Chr2 1 CH_ath_56 7 42 0.000000000133348
Amborella trichopoda AmTr_v1.0_scaffold00049 1 CH_atr_12 9 10 1.59366e-20
Amborella trichopoda AmTr_v1.0_scaffold00059 1 CH_atr_123 6 42 0.00000251338
Amborella trichopoda AmTr_v1.0_scaffold00009 1 CH_atr_221 3 3 0.000125376
Amborella trichopoda AmTr_v1.0_scaffold00008 1 CH_atr_309 3 4 0.000500871
Amborella trichopoda AmTr_v1.0_scaffold00006 1 CH_atr_84 5 10 0.0000000812231
Brachypodium distachyon Bd5 1 CH_bdi_266 3 4 0.000281327
Calamus simplicifolius scaffold337 1 CH_calsi_146 3 3 0.0000667918
Calamus simplicifolius scaffold1082 1 CH_calsi_147 3 3 0.0000667918
Chara braunii BFEA01000407 1 CH_cbr_34 4 22 0.0000010257
Cenchrus purpureus GWHAORA00000004 1 CH_cpu_223 5 5 0.00000000786843
Cenchrus purpureus GWHAORA00000011 1 CH_cpu_302 5 7 0.000000164526
Cenchrus purpureus GWHAORA00000005 1 CH_cpu_422 4 4 0.0000030481
Cenchrus purpureus GWHAORA00000004 1 CH_cpu_558 4 6 0.0000455314
Dioscorea dumetorum contig184 1 CH_ddu_197 3 3 0.000198483
Dioscorea dumetorum contig554 1 CH_ddu_198 3 3 0.000198483
Digitaria exilis Dexi_CM05836_chr01B 1 CH_dex_135 5 6 0.00000000899064
Digitaria exilis Dexi_CM05836_chr01A 1 CH_dex_161 5 7 0.0000000314181
Digitaria exilis Dexi_CM05836_chr04B 1 CH_dex_183 5 8 0.0000000836506
Digitaria exilis Dexi_CM05836_chr04A 1 CH_dex_298 4 5 0.00000400323
Digitaria exilis Dexi_CM05836_chr02A 1 CH_dex_299 4 5 0.00000400323
Digitaria exilis Dexi_CM05836_chr09B 1 CH_dex_402 4 8 0.0000557911
Digitaria exilis Dexi_CM05836_chr09A 1 CH_dex_403 4 8 0.0000557911
Eragrostis curvula 1 1 CH_ecu_3 21 34 1.06919e-44
Eragrostis curvula 1 1 CH_ecu_784 4 14 0.000761977
Elaeis guineensis EG5.1_Chr16 1 CH_egu_178 3 3 0.000133006
Elaeis guineensis EG5.1_Chr1 1 CH_egu_18 5 5 0.000000000397574
Glycine max Gm09 1 CH_gma_105 5 5 0.0000000017353
Glycine max Gm10 1 CH_gma_146 5 7 0.0000000363212
Glycine max Gm19 1 CH_gma_348 4 8 0.0000611489
Glycine max Gm13 1 CH_gma_533 3 3 0.00044118
Glycine max Gm18 1 CH_gma_534 3 3 0.00044118
Glycine max Gm17 1 CH_gma_535 3 3 0.00044118
Glycine max Gm02 1 CH_gma_536 3 3 0.00044118
Glycine max Gm07 1 CH_gma_537 3 3 0.00044118
Glycine max Gm09 1 CH_gma_538 3 3 0.00044118
Glycine max Gm20 1 CH_gma_539 3 3 0.00044118
Glycine max Gm03 1 CH_gma_77 6 8 0.0000000000946651
Lolium perenne Lp_chr2_0 1 CH_lpe_180 4 9 0.00000697603
Magnolia biondii Chr16 1 CH_mbi_196 4 5 0.000000542902
Magnolia biondii Chr18 1 CH_mbi_377 3 3 0.0000877586
Magnolia biondii Chr17 1 CH_mbi_45 7 10 0.0000000000000219016
Magnolia biondii Chr19 1 CH_mbi_81 6 12 0.000000000144223
Miscanthus sinensis Chr01 1 CH_msi_103 5 7 0.00000000333864
Miscanthus sinensis Chr16 1 CH_msi_160 4 4 0.000000135534
Miscanthus sinensis Chr02 1 CH_msi_249 4 7 0.00000473011
Oryza alta GWHAZTO00000003 1 CH_oal_156 4 4 0.0000000627291
Oryza alta GWHAZTO00000010 1 CH_oal_258 4 7 0.00000219089
Oryza brachyantha 3 1 CH_obr_80 5 13 0.000000103764
Oryza sativa ssp. indica Chr3 1 CH_osaindica_208 4 14 0.0000416027
Oryza sativa ssp. indica Chr11 1 CH_osaindica_299 3 4 0.000170574
Oryza sativa ssp. indica Chr10 1 CH_osaindica_300 3 4 0.000170574
Oryza sativa ssp. indica Chr6 1 CH_osaindica_403 3 6 0.00085157
Oryza sativa Kitaake Chr10 1 CH_osak_200 4 5 0.000000476649
Oryza sativa Kitaake Chr3 1 CH_osak_228 4 6 0.00000142852
Oryza sativa Kitaake Chr6 1 CH_osak_391 3 4 0.000307936
Oryza sativa Kitaake Chr12 1 CH_osak_469 3 5 0.000769104
Oryza sativa ssp. japonica chr03 1 CH_osa_171 4 11 0.000011395
Oryza sativa ssp. japonica chr06 1 CH_osa_293 3 5 0.000206361
Oryza sativa ssp. japonica chr10 1 CH_osa_357 3 5 0.000515479
Oropetium thomaeum Chromosome_4 1 CH_oth_219 3 4 0.000300089
Oropetium thomaeum Chromosome_1 1 CH_oth_67 4 4 0.000000098906
Phyllostachys edulis hic_scaffold_17 1 CH_ped_146 4 4 0.000000246677
Phyllostachys edulis hic_scaffold_13 1 CH_ped_358 3 3 0.000168162
Phyllostachys edulis hic_scaffold_15 1 CH_ped_359 3 3 0.000168162
Panicum hallii Chr01 1 CH_pha_111 5 9 0.0000000373083
Panicum hallii Chr09 1 CH_pha_78 5 6 0.00000000178321
Populus trichocarpa Chr11 1 CH_ptr_192 4 4 0.000000282514
Populus trichocarpa Chr13 1 CH_ptr_226 4 5 0.0000014107
Populus trichocarpa Chr10 1 CH_ptr_350 3 3 0.000171491
Populus trichocarpa Chr17 1 CH_ptr_351 3 3 0.000171491
Populus trichocarpa Chr04 1 CH_ptr_459 4 15 0.000380054
Populus trichocarpa Chr11 1 CH_ptr_50 7 7 0.00000000000000113457
Sorghum bicolor Chr01 1 CH_sbi_192 4 6 0.00000176455
Sorghum bicolor Chr04 1 CH_sbi_394 3 4 0.000356839
Sorghum bicolor Chr09 1 CH_sbi_395 3 4 0.000356839
Secale cereale GWHASIY00000006 1 CH_sce_321 4 5 0.00000162689
Secale cereale GWHASIY00000004 1 CH_sce_386 4 7 0.0000113587
Secale cereale GWHASIY00000005 1 CH_sce_667 3 3 0.000201565
Sequoiadendron giganteum chr9 1 CH_sgi_126 10 20 2.49761e-17
Sequoiadendron giganteum chr9 1 CH_sgi_132 10 21 4.75885e-17
Sequoiadendron giganteum chr4 1 CH_sgi_18 16 23 2.53669e-33
Sequoiadendron giganteum chr6 1 CH_sgi_229 7 9 0.000000000000485045
Sequoiadendron giganteum chr7 1 CH_sgi_295 6 7 0.0000000000426287
Sequoiadendron giganteum chr6 1 CH_sgi_366 5 5 0.00000000272255
Sequoiadendron giganteum chr3 1 CH_sgi_367 5 5 0.00000000272255
Sequoiadendron giganteum chr6 1 CH_sgi_597 4 4 0.00000120179
Sequoiadendron giganteum chr7 1 CH_sgi_683 4 6 0.0000179607
Setaria italica scaffold_9 1 CH_sit_197 4 5 0.00000142858
Setaria italica scaffold_1 1 CH_sit_223 4 6 0.00000428004
Setaria italica scaffold_5 1 CH_sit_454 3 4 0.000690871
Solanum lycopersicum SL4.0ch02 1 CH_sly_224 4 5 0.00000311553
Solanum lycopersicum SL4.0ch10 1 CH_sly_230 6 35 0.00000378559
Solanum lycopersicum SL4.0ch05 1 CH_sly_448 3 3 0.000308198
Solanum lycopersicum SL4.0ch04 1 CH_sly_449 3 3 0.000308198
Solanum lycopersicum SL4.0ch03 1 CH_sly_46 7 7 0.00000000000000474506
Spirodela polyrhiza pseudo3 1 CH_spo_73 4 5 0.000000200746
Saccharum spontaneum Chr1D 1 CH_ssp_182 5 7 0.0000000391685
Saccharum spontaneum Chr1B 1 CH_ssp_335 5 11 0.000000856435
Saccharum spontaneum Chr1C 1 CH_ssp_352 4 4 0.00000101834
Setaria viridis Chr_01 1 CH_svi_211 4 6 0.00000311011
Setaria viridis Chr_09 1 CH_svi_221 4 7 0.00000724826
Setaria viridis Chr_05 1 CH_svi_456 3 4 0.000558379
Setaria viridis Chr_09 1 CH_svi_457 3 4 0.000558379
Triticum aestivum Chr3A 1 CH_tae_1115 4 9 0.000168693
Triticum aestivum Chr5D 1 CH_tae_1418 3 3 0.000721072
Triticum aestivum Chr3B 1 CH_tae_241 7 13 0.000000000014562
Triticum aestivum Chr5A 1 CH_tae_690 4 4 0.00000134891
Triticum aestivum Chr3D 1 CH_tae_980 4 7 0.0000469998
Triticum dicoccoides 3B 1 CH_tdi_108 6 11 0.000000000825589
Triticum dicoccoides 3A 1 CH_tdi_374 4 8 0.0000433824
Triticum turgidum chr3B 1 CH_ttu_165 6 13 0.00000000508471
Triticum turgidum chr3A 1 CH_ttu_408 4 7 0.000012849
Vanilla planifolia CM028150.1 1 CH_vpl_208 3 3 0.0000748434
Vanilla planifolia CM028150.1 1 CH_vpl_209 3 3 0.0000748434
Zoysia japonica ssp. nagirizaki Zjn_sc00019.1 1 CH_zjn_187 3 4 0.000280789
Zoysia japonica ssp. nagirizaki Zjn_sc00138.1 1 CH_zjn_27 4 4 0.0000000740761
Zea mays B73 5 1 CH_zma_212 3 4 0.000271079
Zostera marina Chr01 1 CH_zosmarina_144 3 4 0.000183095
Ananas comosus LG05 2 CH_aco_63 3 3 0.000067548
Asparagus officinalis AsparagusV1_07 2 CH_aof_146 3 5 0.000250355
Allium sativum chr8 2 CH_asa_158 5 9 0.0000000221295
Allium sativum chr4 2 CH_asa_316 4 8 0.00000991414
Allium sativum chr8 2 CH_asa_756 3 4 0.000451173
Allium sativum chr8 2 CH_asa_79 6 10 0.0000000000450253
Aegilops tauschii 3D 2 CH_ata_179 4 9 0.000021886
Arabidopsis thaliana Chr1 2 CH_ath_146 4 6 0.000000264152
Arabidopsis thaliana Chr1 2 CH_ath_238 4 17 0.0000416579
Arabidopsis thaliana Chr2 2 CH_ath_56 7 42 0.000000000133348
Amborella trichopoda AmTr_v1.0_scaffold00049 2 CH_atr_12 9 10 1.59366e-20
Amborella trichopoda AmTr_v1.0_scaffold00059 2 CH_atr_123 6 42 0.00000251338
Amborella trichopoda AmTr_v1.0_scaffold00009 2 CH_atr_221 3 3 0.000125376
Amborella trichopoda AmTr_v1.0_scaffold00008 2 CH_atr_309 3 4 0.000500871
Amborella trichopoda AmTr_v1.0_scaffold00006 2 CH_atr_84 5 10 0.0000000812231
Brachypodium distachyon Bd5 2 CH_bdi_266 3 4 0.000281327
Calamus simplicifolius scaffold337 2 CH_calsi_146 3 3 0.0000667918
Calamus simplicifolius scaffold1082 2 CH_calsi_147 3 3 0.0000667918
Chara braunii BFEA01000407 2 CH_cbr_34 4 22 0.0000010257
Cenchrus purpureus GWHAORA00000004 2 CH_cpu_223 5 5 0.00000000786843
Cenchrus purpureus GWHAORA00000011 2 CH_cpu_302 5 7 0.000000164526
Cenchrus purpureus GWHAORA00000005 2 CH_cpu_422 4 4 0.0000030481
Cenchrus purpureus GWHAORA00000004 2 CH_cpu_558 4 6 0.0000455314
Dioscorea dumetorum contig184 2 CH_ddu_197 3 3 0.000198483
Dioscorea dumetorum contig554 2 CH_ddu_198 3 3 0.000198483
Digitaria exilis Dexi_CM05836_chr01B 2 CH_dex_135 5 6 0.00000000899064
Digitaria exilis Dexi_CM05836_chr01A 2 CH_dex_161 5 7 0.0000000314181
Digitaria exilis Dexi_CM05836_chr04B 2 CH_dex_183 5 8 0.0000000836506
Digitaria exilis Dexi_CM05836_chr04A 2 CH_dex_298 4 5 0.00000400323
Digitaria exilis Dexi_CM05836_chr02A 2 CH_dex_299 4 5 0.00000400323
Digitaria exilis Dexi_CM05836_chr09B 2 CH_dex_402 4 8 0.0000557911
Digitaria exilis Dexi_CM05836_chr09A 2 CH_dex_403 4 8 0.0000557911
Eragrostis curvula 1 2 CH_ecu_3 21 34 1.06919e-44
Eragrostis curvula 1 2 CH_ecu_784 4 14 0.000761977
Elaeis guineensis EG5.1_Chr16 2 CH_egu_178 3 3 0.000133006
Elaeis guineensis EG5.1_Chr1 2 CH_egu_18 5 5 0.000000000397574
Glycine max Gm09 2 CH_gma_105 5 5 0.0000000017353
Glycine max Gm10 2 CH_gma_146 5 7 0.0000000363212
Glycine max Gm19 2 CH_gma_348 4 8 0.0000611489
Glycine max Gm13 2 CH_gma_533 3 3 0.00044118
Glycine max Gm18 2 CH_gma_534 3 3 0.00044118
Glycine max Gm17 2 CH_gma_535 3 3 0.00044118
Glycine max Gm02 2 CH_gma_536 3 3 0.00044118
Glycine max Gm07 2 CH_gma_537 3 3 0.00044118
Glycine max Gm09 2 CH_gma_538 3 3 0.00044118
Glycine max Gm20 2 CH_gma_539 3 3 0.00044118
Glycine max Gm03 2 CH_gma_77 6 8 0.0000000000946651
Lolium perenne Lp_chr2_0 2 CH_lpe_180 4 9 0.00000697603
Magnolia biondii Chr16 2 CH_mbi_196 4 5 0.000000542902
Magnolia biondii Chr18 2 CH_mbi_377 3 3 0.0000877586
Magnolia biondii Chr17 2 CH_mbi_45 7 10 0.0000000000000219016
Magnolia biondii Chr19 2 CH_mbi_81 6 12 0.000000000144223
Miscanthus sinensis Chr01 2 CH_msi_103 5 7 0.00000000333864
Miscanthus sinensis Chr16 2 CH_msi_160 4 4 0.000000135534
Miscanthus sinensis Chr02 2 CH_msi_249 4 7 0.00000473011
Oryza alta GWHAZTO00000003 2 CH_oal_156 4 4 0.0000000627291
Oryza alta GWHAZTO00000010 2 CH_oal_258 4 7 0.00000219089
Oryza brachyantha 3 2 CH_obr_80 5 13 0.000000103764
Oryza sativa ssp. indica Chr3 2 CH_osaindica_208 4 14 0.0000416027
Oryza sativa ssp. indica Chr11 2 CH_osaindica_299 3 4 0.000170574
Oryza sativa ssp. indica Chr10 2 CH_osaindica_300 3 4 0.000170574
Oryza sativa ssp. indica Chr6 2 CH_osaindica_403 3 6 0.00085157
Oryza sativa Kitaake Chr10 2 CH_osak_200 4 5 0.000000476649
Oryza sativa Kitaake Chr3 2 CH_osak_228 4 6 0.00000142852
Oryza sativa Kitaake Chr6 2 CH_osak_391 3 4 0.000307936
Oryza sativa Kitaake Chr12 2 CH_osak_469 3 5 0.000769104
Oryza sativa ssp. japonica chr03 2 CH_osa_171 4 11 0.000011395
Oryza sativa ssp. japonica chr06 2 CH_osa_293 3 5 0.000206361
Oryza sativa ssp. japonica chr10 2 CH_osa_357 3 5 0.000515479
Oropetium thomaeum Chromosome_4 2 CH_oth_219 3 4 0.000300089
Oropetium thomaeum Chromosome_1 2 CH_oth_67 4 4 0.000000098906
Phyllostachys edulis hic_scaffold_17 2 CH_ped_146 4 4 0.000000246677
Phyllostachys edulis hic_scaffold_13 2 CH_ped_358 3 3 0.000168162
Phyllostachys edulis hic_scaffold_15 2 CH_ped_359 3 3 0.000168162
Panicum hallii Chr01 2 CH_pha_111 5 9 0.0000000373083
Panicum hallii Chr09 2 CH_pha_78 5 6 0.00000000178321
Populus trichocarpa Chr11 2 CH_ptr_192 4 4 0.000000282514
Populus trichocarpa Chr13 2 CH_ptr_226 4 5 0.0000014107
Populus trichocarpa Chr10 2 CH_ptr_350 3 3 0.000171491
Populus trichocarpa Chr17 2 CH_ptr_351 3 3 0.000171491
Populus trichocarpa Chr04 2 CH_ptr_459 4 15 0.000380054
Populus trichocarpa Chr11 2 CH_ptr_50 7 7 0.00000000000000113457
Sorghum bicolor Chr01 2 CH_sbi_192 4 6 0.00000176455
Sorghum bicolor Chr04 2 CH_sbi_394 3 4 0.000356839
Sorghum bicolor Chr09 2 CH_sbi_395 3 4 0.000356839
Secale cereale GWHASIY00000006 2 CH_sce_321 4 5 0.00000162689
Secale cereale GWHASIY00000004 2 CH_sce_386 4 7 0.0000113587
Secale cereale GWHASIY00000005 2 CH_sce_667 3 3 0.000201565
Sequoiadendron giganteum chr9 2 CH_sgi_126 10 20 2.49761e-17
Sequoiadendron giganteum chr9 2 CH_sgi_132 10 21 4.75885e-17
Sequoiadendron giganteum chr4 2 CH_sgi_18 16 23 2.53669e-33
Sequoiadendron giganteum chr6 2 CH_sgi_229 7 9 0.000000000000485045
Sequoiadendron giganteum chr7 2 CH_sgi_295 6 7 0.0000000000426287
Sequoiadendron giganteum chr6 2 CH_sgi_366 5 5 0.00000000272255
Sequoiadendron giganteum chr3 2 CH_sgi_367 5 5 0.00000000272255
Sequoiadendron giganteum chr6 2 CH_sgi_597 4 4 0.00000120179
Sequoiadendron giganteum chr7 2 CH_sgi_683 4 6 0.0000179607
Setaria italica scaffold_9 2 CH_sit_197 4 5 0.00000142858
Setaria italica scaffold_1 2 CH_sit_223 4 6 0.00000428004
Setaria italica scaffold_5 2 CH_sit_454 3 4 0.000690871
Solanum lycopersicum SL4.0ch02 2 CH_sly_224 4 5 0.00000311553
Solanum lycopersicum SL4.0ch10 2 CH_sly_230 6 35 0.00000378559
Solanum lycopersicum SL4.0ch05 2 CH_sly_448 3 3 0.000308198
Solanum lycopersicum SL4.0ch04 2 CH_sly_449 3 3 0.000308198
Solanum lycopersicum SL4.0ch03 2 CH_sly_46 7 7 0.00000000000000474506
Spirodela polyrhiza pseudo3 2 CH_spo_73 4 5 0.000000200746
Saccharum spontaneum Chr1D 2 CH_ssp_182 5 7 0.0000000391685
Saccharum spontaneum Chr1B 2 CH_ssp_335 5 11 0.000000856435
Saccharum spontaneum Chr1C 2 CH_ssp_352 4 4 0.00000101834
Setaria viridis Chr_01 2 CH_svi_211 4 6 0.00000311011
Setaria viridis Chr_09 2 CH_svi_221 4 7 0.00000724826
Setaria viridis Chr_05 2 CH_svi_456 3 4 0.000558379
Setaria viridis Chr_09 2 CH_svi_457 3 4 0.000558379
Triticum aestivum Chr3A 2 CH_tae_1115 4 9 0.000168693
Triticum aestivum Chr5D 2 CH_tae_1418 3 3 0.000721072
Triticum aestivum Chr3B 2 CH_tae_241 7 13 0.000000000014562
Triticum aestivum Chr5A 2 CH_tae_690 4 4 0.00000134891
Triticum aestivum Chr3D 2 CH_tae_980 4 7 0.0000469998
Triticum dicoccoides 3B 2 CH_tdi_108 6 11 0.000000000825589
Triticum dicoccoides 3A 2 CH_tdi_374 4 8 0.0000433824
Triticum turgidum chr3B 2 CH_ttu_165 6 13 0.00000000508471
Triticum turgidum chr3A 2 CH_ttu_408 4 7 0.000012849
Vanilla planifolia CM028150.1 2 CH_vpl_208 3 3 0.0000748434
Vanilla planifolia CM028150.1 2 CH_vpl_209 3 3 0.0000748434
Zoysia japonica ssp. nagirizaki Zjn_sc00019.1 2 CH_zjn_187 3 4 0.000280789
Zoysia japonica ssp. nagirizaki Zjn_sc00138.1 2 CH_zjn_27 4 4 0.0000000740761
Zea mays B73 5 2 CH_zma_212 3 4 0.000271079
Zostera marina Chr01 2 CH_zosmarina_144 3 4 0.000183095

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001