Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.APC superfamily.APC family.gamma-aminobutyric acid transporter (GABP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brachypodium distachyon | Bd2 | 1 | CH_bdi_82 | 3 | 3 | 0.00000011409 |
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_166 | 4 | 4 | 0.000000000271219 |
| Cenchrus purpureus | GWHAORA00000007 | 1 | CH_cpu_191 | 4 | 5 | 0.00000000135584 |
| Digitaria exilis | Dexi_CM05836_chr05B | 1 | CH_dex_339 | 3 | 7 | 0.0000128939 |
| Eragrostis curvula | Contig30 | 1 | CH_ecu_452 | 3 | 6 | 0.0000164076 |
| Eragrostis curvula | Contig8 | 1 | CH_ecu_98 | 5 | 6 | 0.000000000000203587 |
| Glycine max | Gm20 | 1 | CH_gma_508 | 2 | 2 | 0.000379557 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_156 | 3 | 4 | 0.000000197634 |
| Lolium perenne | Lp_chr3_0 | 1 | CH_lpe_137 | 3 | 5 | 0.000000309914 |
| Miscanthus sinensis | Chr05 | 1 | CH_msi_168 | 3 | 3 | 0.000000256604 |
| Miscanthus sinensis | Chr06 | 1 | CH_msi_203 | 3 | 4 | 0.0000010263 |
| Oryza alta | GWHAZTO00000001 | 1 | CH_oal_211 | 3 | 5 | 0.000000730853 |
| Oryza alta | GWHAZTO00000013 | 1 | CH_oal_212 | 3 | 5 | 0.000000730853 |
| Oryza brachyantha | 1 | 1 | CH_obr_35 | 4 | 4 | 0.0000000000223812 |
| Oryza sativa ssp. indica | Chr1 | 1 | CH_osaindica_56 | 4 | 6 | 0.0000000000930604 |
| Oryza sativa Kitaake | Chr1 | 1 | CH_osak_46 | 5 | 6 | 0.0000000000000094856 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_24 | 5 | 9 | 0.000000000000154361 |
| Panicum hallii | Chr05 | 1 | CH_pha_53 | 4 | 4 | 0.0000000000412124 |
| Sorghum bicolor | Chr03 | 1 | CH_sbi_73 | 4 | 5 | 0.000000000106014 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_315 | 3 | 4 | 0.00000149231 |
| Setaria italica | scaffold_5 | 1 | CH_sit_38 | 5 | 5 | 0.00000000000000476799 |
| Selaginella moellendorffii | scaffold_3 | 1 | CH_smo_42 | 3 | 3 | 0.00000109853 |
| Setaria viridis | Chr_05 | 1 | CH_svi_70 | 4 | 5 | 0.000000000074581 |
| Triticum aestivum | Chr3A | 1 | CH_tae_326 | 4 | 5 | 0.000000000587617 |
| Triticum aestivum | Chr3D | 1 | CH_tae_327 | 4 | 5 | 0.000000000587617 |
| Triticum aestivum | Chr3B | 1 | CH_tae_394 | 4 | 7 | 0.0000000041122 |
| Triticum dicoccoides | 3A | 1 | CH_tdi_263 | 3 | 5 | 0.00000290734 |
| Triticum dicoccoides | 3B | 1 | CH_tdi_309 | 3 | 7 | 0.0000101733 |
| Triticum turgidum | chr3B | 1 | CH_ttu_239 | 4 | 18 | 0.000000200024 |
| Triticum turgidum | chr3A | 1 | CH_ttu_310 | 3 | 4 | 0.00000167595 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00009.1 | 1 | CH_zjn_213 | 2 | 2 | 0.000554929 |
| Zea mays B73 | 3 | 1 | CH_zma_81 | 3 | 5 | 0.000000392121 |
| Brachypodium distachyon | Bd2 | 2 | CH_bdi_82 | 3 | 3 | 0.00000011409 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_166 | 4 | 4 | 0.000000000271219 |
| Cenchrus purpureus | GWHAORA00000007 | 2 | CH_cpu_191 | 4 | 5 | 0.00000000135584 |
| Digitaria exilis | Dexi_CM05836_chr05B | 2 | CH_dex_339 | 3 | 7 | 0.0000128939 |
| Eragrostis curvula | Contig30 | 2 | CH_ecu_452 | 3 | 6 | 0.0000164076 |
| Eragrostis curvula | Contig8 | 2 | CH_ecu_98 | 5 | 6 | 0.000000000000203587 |
| Glycine max | Gm20 | 2 | CH_gma_508 | 2 | 2 | 0.000379557 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_156 | 3 | 4 | 0.000000197634 |
| Lolium perenne | Lp_chr3_0 | 2 | CH_lpe_137 | 3 | 5 | 0.000000309914 |
| Miscanthus sinensis | Chr05 | 2 | CH_msi_168 | 3 | 3 | 0.000000256604 |
| Miscanthus sinensis | Chr06 | 2 | CH_msi_203 | 3 | 4 | 0.0000010263 |
| Oryza alta | GWHAZTO00000001 | 2 | CH_oal_211 | 3 | 5 | 0.000000730853 |
| Oryza alta | GWHAZTO00000013 | 2 | CH_oal_212 | 3 | 5 | 0.000000730853 |
| Oryza brachyantha | 1 | 2 | CH_obr_35 | 4 | 4 | 0.0000000000223812 |
| Oryza sativa ssp. indica | Chr1 | 2 | CH_osaindica_56 | 4 | 6 | 0.0000000000930604 |
| Oryza sativa Kitaake | Chr1 | 2 | CH_osak_46 | 5 | 6 | 0.0000000000000094856 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_24 | 5 | 9 | 0.000000000000154361 |
| Panicum hallii | Chr05 | 2 | CH_pha_53 | 4 | 4 | 0.0000000000412124 |
| Sorghum bicolor | Chr03 | 2 | CH_sbi_73 | 4 | 5 | 0.000000000106014 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_315 | 3 | 4 | 0.00000149231 |
| Setaria italica | scaffold_5 | 2 | CH_sit_38 | 5 | 5 | 0.00000000000000476799 |
| Selaginella moellendorffii | scaffold_3 | 2 | CH_smo_42 | 3 | 3 | 0.00000109853 |
| Setaria viridis | Chr_05 | 2 | CH_svi_70 | 4 | 5 | 0.000000000074581 |
| Triticum aestivum | Chr3A | 2 | CH_tae_326 | 4 | 5 | 0.000000000587617 |
| Triticum aestivum | Chr3D | 2 | CH_tae_327 | 4 | 5 | 0.000000000587617 |
| Triticum aestivum | Chr3B | 2 | CH_tae_394 | 4 | 7 | 0.0000000041122 |
| Triticum dicoccoides | 3A | 2 | CH_tdi_263 | 3 | 5 | 0.00000290734 |
| Triticum dicoccoides | 3B | 2 | CH_tdi_309 | 3 | 7 | 0.0000101733 |
| Triticum turgidum | chr3B | 2 | CH_ttu_239 | 4 | 18 | 0.000000200024 |
| Triticum turgidum | chr3A | 2 | CH_ttu_310 | 3 | 4 | 0.00000167595 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00009.1 | 2 | CH_zjn_213 | 2 | 2 | 0.000554929 |
| Zea mays B73 | 3 | 2 | CH_zma_81 | 3 | 5 | 0.000000392121 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |