Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.APC superfamily.AAAP family.solute transporter (AAAP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr3 | 1 | CH_asa_215 | 4 | 5 | 0.000000255461 |
| Allium sativum | chr5 | 1 | CH_asa_5 | 13 | 27 | 2.91761e-28 |
| Allium sativum | chr3 | 1 | CH_asa_72 | 8 | 49 | 0.0000000000160046 |
| Amborella trichopoda | AmTr_v1.0_scaffold00010 | 1 | CH_atr_30 | 6 | 8 | 0.000000000000108084 |
| Amborella trichopoda | AmTr_v1.0_scaffold00006 | 1 | CH_atr_55 | 5 | 10 | 0.00000000152772 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_214 | 4 | 4 | 0.00000000585382 |
| Chlamydomonas reinhardtii | chromosome_2 | 1 | CH_cre_46 | 2 | 2 | 0.0003412 |
| Digitaria exilis | Dexi_CM05836_chr05A | 1 | CH_dex_346 | 3 | 3 | 0.0000178597 |
| Eragrostis curvula | 3 | 1 | CH_ecu_289 | 4 | 7 | 0.000000219793 |
| Eragrostis curvula | 1 | 1 | CH_ecu_419 | 4 | 15 | 0.00000854085 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_284 | 3 | 6 | 0.0000478422 |
| Magnolia biondii | Chr15 | 1 | CH_mbi_295 | 3 | 6 | 0.0000257399 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_95 | 4 | 5 | 0.00000000171973 |
| Oryza alta | GWHAZTO00000004 | 1 | CH_oal_539 | 3 | 7 | 0.000139394 |
| Oryza alta | GWHAZTO00000016 | 1 | CH_oal_540 | 3 | 7 | 0.000139394 |
| Phyllostachys edulis | hic_scaffold_3 | 1 | CH_ped_243 | 3 | 3 | 0.0000135874 |
| Phyllostachys edulis | hic_scaffold_14 | 1 | CH_ped_244 | 3 | 3 | 0.0000135874 |
| Phyllostachys edulis | hic_scaffold_24 | 1 | CH_ped_293 | 3 | 4 | 0.0000543236 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_365 | 4 | 18 | 0.00000516156 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_491 | 4 | 10 | 0.0000000360163 |
| Setaria italica | scaffold_5 | 1 | CH_sit_234 | 3 | 3 | 0.00000672141 |
| Triticum aestivum | Chr2B | 1 | CH_tae_1116 | 3 | 5 | 0.000170506 |
| Triticum aestivum | Chr2D | 1 | CH_tae_1117 | 3 | 5 | 0.000170506 |
| Triticum aestivum | Chr2A | 1 | CH_tae_1261 | 3 | 6 | 0.000340875 |
| Triticum dicoccoides | 6B | 1 | CH_tdi_376 | 3 | 4 | 0.0000445855 |
| Triticum dicoccoides | 2A | 1 | CH_tdi_473 | 3 | 6 | 0.000222747 |
| Triticum turgidum | chr4A | 1 | CH_ttu_468 | 3 | 4 | 0.0000494202 |
| Triticum turgidum | chr2A | 1 | CH_ttu_521 | 3 | 5 | 0.000123498 |
| Triticum turgidum | chr2B | 1 | CH_ttu_522 | 3 | 5 | 0.000123498 |
| Allium sativum | chr3 | 2 | CH_asa_215 | 4 | 5 | 0.000000255461 |
| Allium sativum | chr5 | 2 | CH_asa_5 | 13 | 27 | 2.91761e-28 |
| Allium sativum | chr3 | 2 | CH_asa_72 | 8 | 49 | 0.0000000000160046 |
| Amborella trichopoda | AmTr_v1.0_scaffold00010 | 2 | CH_atr_30 | 6 | 8 | 0.000000000000108084 |
| Amborella trichopoda | AmTr_v1.0_scaffold00006 | 2 | CH_atr_55 | 5 | 10 | 0.00000000152772 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_214 | 4 | 4 | 0.00000000585382 |
| Chlamydomonas reinhardtii | chromosome_2 | 2 | CH_cre_46 | 2 | 2 | 0.0003412 |
| Digitaria exilis | Dexi_CM05836_chr05A | 2 | CH_dex_346 | 3 | 3 | 0.0000178597 |
| Eragrostis curvula | 3 | 2 | CH_ecu_289 | 4 | 7 | 0.000000219793 |
| Eragrostis curvula | 1 | 2 | CH_ecu_419 | 4 | 15 | 0.00000854085 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_284 | 3 | 6 | 0.0000478422 |
| Magnolia biondii | Chr15 | 2 | CH_mbi_295 | 3 | 6 | 0.0000257399 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_95 | 4 | 5 | 0.00000000171973 |
| Oryza alta | GWHAZTO00000004 | 2 | CH_oal_539 | 3 | 7 | 0.000139394 |
| Oryza alta | GWHAZTO00000016 | 2 | CH_oal_540 | 3 | 7 | 0.000139394 |
| Phyllostachys edulis | hic_scaffold_3 | 2 | CH_ped_243 | 3 | 3 | 0.0000135874 |
| Phyllostachys edulis | hic_scaffold_14 | 2 | CH_ped_244 | 3 | 3 | 0.0000135874 |
| Phyllostachys edulis | hic_scaffold_24 | 2 | CH_ped_293 | 3 | 4 | 0.0000543236 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_365 | 4 | 18 | 0.00000516156 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_491 | 4 | 10 | 0.0000000360163 |
| Setaria italica | scaffold_5 | 2 | CH_sit_234 | 3 | 3 | 0.00000672141 |
| Triticum aestivum | Chr2B | 2 | CH_tae_1116 | 3 | 5 | 0.000170506 |
| Triticum aestivum | Chr2D | 2 | CH_tae_1117 | 3 | 5 | 0.000170506 |
| Triticum aestivum | Chr2A | 2 | CH_tae_1261 | 3 | 6 | 0.000340875 |
| Triticum dicoccoides | 6B | 2 | CH_tdi_376 | 3 | 4 | 0.0000445855 |
| Triticum dicoccoides | 2A | 2 | CH_tdi_473 | 3 | 6 | 0.000222747 |
| Triticum turgidum | chr4A | 2 | CH_ttu_468 | 3 | 4 | 0.0000494202 |
| Triticum turgidum | chr2A | 2 | CH_ttu_521 | 3 | 5 | 0.000123498 |
| Triticum turgidum | chr2B | 2 | CH_ttu_522 | 3 | 5 | 0.000123498 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |