Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.MFS superfamily.OCT family.organic cation transporter (OCT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_03 | 1 | CH_aof_210 | 3 | 26 | 0.000777292 |
| Allium sativum | chr6 | 1 | CH_asa_265 | 4 | 15 | 0.00000210333 |
| Allium sativum | chr7_1 | 1 | CH_asa_328 | 3 | 4 | 0.000015954 |
| Allium sativum | chr4 | 1 | CH_asa_58 | 7 | 33 | 0.000000000000243247 |
| Aegilops tauschii | 2D | 1 | CH_ata_38 | 4 | 4 | 0.0000000000125378 |
| Cenchrus purpureus | GWHAORA00000006 | 1 | CH_cpu_374 | 3 | 3 | 0.00000116975 |
| Cenchrus purpureus | GWHAORA00000012 | 1 | CH_cpu_375 | 3 | 3 | 0.00000116975 |
| Dioscorea dumetorum | contig564 | 1 | CH_ddu_194 | 3 | 11 | 0.000141529 |
| Dioscorea dumetorum | contig553 | 1 | CH_ddu_27 | 5 | 8 | 0.00000000000241075 |
| Elaeis guineensis | EG5.1_Chr10 | 1 | CH_egu_311 | 2 | 2 | 0.000947329 |
| Elaeis guineensis | EG5.1_Chr1 | 1 | CH_egu_312 | 2 | 2 | 0.000947329 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_54 | 4 | 5 | 0.0000000000050133 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_51 | 6 | 19 | 0.0000000000000760944 |
| Oryza alta | GWHAZTO00000019 | 1 | CH_oal_720 | 2 | 2 | 0.000564237 |
| Oryza sativa ssp. indica | Chr7 | 1 | CH_osaindica_105 | 3 | 3 | 0.000000140118 |
| Oryza sativa Kitaake | Chr7 | 1 | CH_osak_187 | 3 | 4 | 0.000000380146 |
| Panicum hallii | Chr09 | 1 | CH_pha_163 | 3 | 5 | 0.0000010129 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_78 | 8 | 14 | 3.04826e-22 |
| Setaria italica | scaffold_9 | 1 | CH_sit_178 | 3 | 4 | 0.000000707435 |
| Setaria viridis | Chr_09 | 1 | CH_svi_174 | 3 | 4 | 0.000000571699 |
| Triticum aestivum | Chr2A | 1 | CH_tae_167 | 5 | 6 | 0.000000000000112125 |
| Triticum aestivum | Chr2B | 1 | CH_tae_737 | 3 | 4 | 0.00000279215 |
| Triticum aestivum | Chr2D | 1 | CH_tae_84 | 6 | 6 | 2.79713e-18 |
| Triticum dicoccoides | 2B | 1 | CH_tdi_246 | 3 | 5 | 0.00000158589 |
| Triticum turgidum | chr2A | 1 | CH_ttu_50 | 5 | 6 | 0.0000000000000340034 |
| Asparagus officinalis | AsparagusV1_03 | 2 | CH_aof_210 | 3 | 26 | 0.000777292 |
| Allium sativum | chr6 | 2 | CH_asa_265 | 4 | 15 | 0.00000210333 |
| Allium sativum | chr7_1 | 2 | CH_asa_328 | 3 | 4 | 0.000015954 |
| Allium sativum | chr4 | 2 | CH_asa_58 | 7 | 33 | 0.000000000000243247 |
| Aegilops tauschii | 2D | 2 | CH_ata_38 | 4 | 4 | 0.0000000000125378 |
| Cenchrus purpureus | GWHAORA00000006 | 2 | CH_cpu_374 | 3 | 3 | 0.00000116975 |
| Cenchrus purpureus | GWHAORA00000012 | 2 | CH_cpu_375 | 3 | 3 | 0.00000116975 |
| Dioscorea dumetorum | contig564 | 2 | CH_ddu_194 | 3 | 11 | 0.000141529 |
| Dioscorea dumetorum | contig553 | 2 | CH_ddu_27 | 5 | 8 | 0.00000000000241075 |
| Elaeis guineensis | EG5.1_Chr10 | 2 | CH_egu_311 | 2 | 2 | 0.000947329 |
| Elaeis guineensis | EG5.1_Chr1 | 2 | CH_egu_312 | 2 | 2 | 0.000947329 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_54 | 4 | 5 | 0.0000000000050133 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_51 | 6 | 19 | 0.0000000000000760944 |
| Oryza alta | GWHAZTO00000019 | 2 | CH_oal_720 | 2 | 2 | 0.000564237 |
| Oryza sativa ssp. indica | Chr7 | 2 | CH_osaindica_105 | 3 | 3 | 0.000000140118 |
| Oryza sativa Kitaake | Chr7 | 2 | CH_osak_187 | 3 | 4 | 0.000000380146 |
| Panicum hallii | Chr09 | 2 | CH_pha_163 | 3 | 5 | 0.0000010129 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_78 | 8 | 14 | 3.04826e-22 |
| Setaria italica | scaffold_9 | 2 | CH_sit_178 | 3 | 4 | 0.000000707435 |
| Setaria viridis | Chr_09 | 2 | CH_svi_174 | 3 | 4 | 0.000000571699 |
| Triticum aestivum | Chr2A | 2 | CH_tae_167 | 5 | 6 | 0.000000000000112125 |
| Triticum aestivum | Chr2B | 2 | CH_tae_737 | 3 | 4 | 0.00000279215 |
| Triticum aestivum | Chr2D | 2 | CH_tae_84 | 6 | 6 | 2.79713e-18 |
| Triticum dicoccoides | 2B | 2 | CH_tdi_246 | 3 | 5 | 0.00000158589 |
| Triticum turgidum | chr2A | 2 | CH_ttu_50 | 5 | 6 | 0.0000000000000340034 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |