Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.MFS superfamily.DHA-1 family.metal chelator transporter (ZIF/TOM)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_02 | 1 | CH_aof_7 | 4 | 5 | 0.000000000097187 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_269 | 2 | 2 | 0.0000859476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00095 | 1 | CH_atr_61 | 4 | 19 | 0.00000000582677 |
| Brachypodium distachyon | Bd4 | 1 | CH_bdi_141 | 3 | 5 | 0.00000684276 |
| Brachypodium distachyon | Bd4 | 1 | CH_bdi_52 | 4 | 5 | 0.000000000738655 |
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_208 | 4 | 4 | 0.00000000362689 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_244 | 4 | 5 | 0.0000000181277 |
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_334 | 4 | 9 | 0.000000456134 |
| Cenchrus purpureus | GWHAORA00000008 | 1 | CH_cpu_470 | 3 | 3 | 0.00000782127 |
| Digitaria exilis | Dexi_CM05836_chr05A | 1 | CH_dex_471 | 3 | 9 | 0.000160215 |
| Digitaria exilis | Dexi_CM05836_chr05B | 1 | CH_dex_535 | 3 | 10 | 0.000228826 |
| Eragrostis curvula | 2 | 1 | CH_ecu_170 | 4 | 4 | 0.00000000127918 |
| Eragrostis curvula | Contig4 | 1 | CH_ecu_442 | 3 | 4 | 0.0000138867 |
| Eragrostis curvula | 2 | 1 | CH_ecu_528 | 3 | 6 | 0.0000693924 |
| Eragrostis curvula | 6 | 1 | CH_ecu_83 | 6 | 11 | 0.0000000000000678767 |
| Glycine max | Gm06 | 1 | CH_gma_170 | 3 | 3 | 0.000000181524 |
| Glycine max | Gm13 | 1 | CH_gma_68 | 4 | 4 | 0.0000000000206703 |
| Hordeum vulgare | chr4H | 1 | CH_hvu_249 | 3 | 8 | 0.0000228121 |
| Lolium perenne | Lp_chr4_0 | 1 | CH_lpe_129 | 3 | 3 | 0.000000185968 |
| Lolium perenne | Lp_chr5_0 | 1 | CH_lpe_303 | 3 | 17 | 0.00012628 |
| Miscanthus sinensis | Chr09 | 1 | CH_msi_166 | 4 | 10 | 0.000000223121 |
| Miscanthus sinensis | Chr15 | 1 | CH_msi_234 | 3 | 3 | 0.00000314767 |
| Miscanthus sinensis | Chr10 | 1 | CH_msi_275 | 3 | 4 | 0.0000125873 |
| Oryza alta | GWHAZTO00000024 | 1 | CH_oal_223 | 3 | 3 | 0.000000938046 |
| Oryza alta | GWHAZTO00000023 | 1 | CH_oal_39 | 5 | 8 | 0.00000000000182309 |
| Oryza alta | GWHAZTO00000012 | 1 | CH_oal_45 | 5 | 9 | 0.00000000000410133 |
| Oryza alta | GWHAZTO00000011 | 1 | CH_oal_81 | 4 | 5 | 0.000000000897765 |
| Oryza brachyantha | 12 | 1 | CH_obr_41 | 4 | 4 | 0.000000000134287 |
| Oryza brachyantha | 11 | 1 | CH_obr_57 | 4 | 8 | 0.00000000939361 |
| Oryza sativa ssp. indica | Chr11 | 1 | CH_osaindica_42 | 5 | 8 | 0.00000000000384844 |
| Oryza sativa ssp. indica | Chr12 | 1 | CH_osaindica_87 | 4 | 9 | 0.0000000372269 |
| Oryza sativa Kitaake | Chr12 | 1 | CH_osak_67 | 5 | 7 | 0.00000000000203394 |
| Oryza sativa Kitaake | Chr11 | 1 | CH_osak_71 | 5 | 8 | 0.00000000000542266 |
| Oryza sativa ssp. japonica | chr12 | 1 | CH_osa_179 | 3 | 8 | 0.0000175604 |
| Oryza sativa ssp. japonica | chr11 | 1 | CH_osa_38 | 5 | 11 | 0.0000000000116354 |
| Phyllostachys edulis | hic_scaffold_12 | 1 | CH_ped_27 | 6 | 9 | 6.3724e-16 |
| Panicum hallii | Chr03 | 1 | CH_pha_157 | 3 | 3 | 0.000000835799 |
| Sorghum bicolor | Chr05 | 1 | CH_sbi_207 | 3 | 3 | 0.00000289133 |
| Sorghum bicolor | Chr08 | 1 | CH_sbi_232 | 3 | 4 | 0.0000115617 |
| Sorghum bicolor | Chr03 | 1 | CH_sbi_77 | 6 | 35 | 0.000000000167143 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_264 | 4 | 4 | 0.00000000000520279 |
| Setaria italica | scaffold_8 | 1 | CH_sit_192 | 3 | 4 | 0.00000111181 |
| Setaria italica | scaffold_5 | 1 | CH_sit_449 | 3 | 17 | 0.000620797 |
| Setaria italica | scaffold_7 | 1 | CH_sit_96 | 4 | 6 | 0.00000000435438 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_164 | 3 | 3 | 0.000000180867 |
| Spirodela polyrhiza | pseudo6 | 1 | CH_spo_9 | 7 | 7 | 8.83426e-23 |
| Saccharum spontaneum | Chr3A | 1 | CH_ssp_157 | 6 | 65 | 0.0000000156478 |
| Saccharum spontaneum | Chr5A | 1 | CH_ssp_451 | 3 | 3 | 0.00000465879 |
| Saccharum spontaneum | Chr5C | 1 | CH_ssp_452 | 3 | 3 | 0.00000465879 |
| Saccharum spontaneum | Chr7B | 1 | CH_ssp_615 | 3 | 5 | 0.0000465618 |
| Setaria viridis | Chr_08 | 1 | CH_svi_177 | 3 | 3 | 0.000000673859 |
| Setaria viridis | Chr_07 | 1 | CH_svi_203 | 3 | 5 | 0.00000269494 |
| Setaria viridis | Chr_05 | 1 | CH_svi_394 | 3 | 15 | 0.000305934 |
| Triticum aestivum | Chr4A | 1 | CH_tae_776 | 3 | 3 | 0.00000479717 |
| Triticum aestivum | Chr4D | 1 | CH_tae_777 | 3 | 3 | 0.00000479717 |
| Triticum turgidum | chr4A | 1 | CH_ttu_355 | 3 | 3 | 0.00000380949 |
| Zea mays B73 | 3 | 1 | CH_zma_236 | 4 | 73 | 0.00043008 |
| Zostera marina | Chr06 | 1 | CH_zosmarina_40 | 3 | 3 | 0.0000000139858 |
| Asparagus officinalis | AsparagusV1_02 | 2 | CH_aof_7 | 4 | 5 | 0.000000000097187 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_269 | 2 | 2 | 0.0000859476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00095 | 2 | CH_atr_61 | 4 | 19 | 0.00000000582677 |
| Brachypodium distachyon | Bd4 | 2 | CH_bdi_141 | 3 | 5 | 0.00000684276 |
| Brachypodium distachyon | Bd4 | 2 | CH_bdi_52 | 4 | 5 | 0.000000000738655 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_208 | 4 | 4 | 0.00000000362689 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_244 | 4 | 5 | 0.0000000181277 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_334 | 4 | 9 | 0.000000456134 |
| Cenchrus purpureus | GWHAORA00000008 | 2 | CH_cpu_470 | 3 | 3 | 0.00000782127 |
| Digitaria exilis | Dexi_CM05836_chr05A | 2 | CH_dex_471 | 3 | 9 | 0.000160215 |
| Digitaria exilis | Dexi_CM05836_chr05B | 2 | CH_dex_535 | 3 | 10 | 0.000228826 |
| Eragrostis curvula | 2 | 2 | CH_ecu_170 | 4 | 4 | 0.00000000127918 |
| Eragrostis curvula | Contig4 | 2 | CH_ecu_442 | 3 | 4 | 0.0000138867 |
| Eragrostis curvula | 2 | 2 | CH_ecu_528 | 3 | 6 | 0.0000693924 |
| Eragrostis curvula | 6 | 2 | CH_ecu_83 | 6 | 11 | 0.0000000000000678767 |
| Glycine max | Gm06 | 2 | CH_gma_170 | 3 | 3 | 0.000000181524 |
| Glycine max | Gm13 | 2 | CH_gma_68 | 4 | 4 | 0.0000000000206703 |
| Hordeum vulgare | chr4H | 2 | CH_hvu_249 | 3 | 8 | 0.0000228121 |
| Lolium perenne | Lp_chr4_0 | 2 | CH_lpe_129 | 3 | 3 | 0.000000185968 |
| Lolium perenne | Lp_chr5_0 | 2 | CH_lpe_303 | 3 | 17 | 0.00012628 |
| Miscanthus sinensis | Chr09 | 2 | CH_msi_166 | 4 | 10 | 0.000000223121 |
| Miscanthus sinensis | Chr15 | 2 | CH_msi_234 | 3 | 3 | 0.00000314767 |
| Miscanthus sinensis | Chr10 | 2 | CH_msi_275 | 3 | 4 | 0.0000125873 |
| Oryza alta | GWHAZTO00000024 | 2 | CH_oal_223 | 3 | 3 | 0.000000938046 |
| Oryza alta | GWHAZTO00000023 | 2 | CH_oal_39 | 5 | 8 | 0.00000000000182309 |
| Oryza alta | GWHAZTO00000012 | 2 | CH_oal_45 | 5 | 9 | 0.00000000000410133 |
| Oryza alta | GWHAZTO00000011 | 2 | CH_oal_81 | 4 | 5 | 0.000000000897765 |
| Oryza brachyantha | 12 | 2 | CH_obr_41 | 4 | 4 | 0.000000000134287 |
| Oryza brachyantha | 11 | 2 | CH_obr_57 | 4 | 8 | 0.00000000939361 |
| Oryza sativa ssp. indica | Chr11 | 2 | CH_osaindica_42 | 5 | 8 | 0.00000000000384844 |
| Oryza sativa ssp. indica | Chr12 | 2 | CH_osaindica_87 | 4 | 9 | 0.0000000372269 |
| Oryza sativa Kitaake | Chr12 | 2 | CH_osak_67 | 5 | 7 | 0.00000000000203394 |
| Oryza sativa Kitaake | Chr11 | 2 | CH_osak_71 | 5 | 8 | 0.00000000000542266 |
| Oryza sativa ssp. japonica | chr12 | 2 | CH_osa_179 | 3 | 8 | 0.0000175604 |
| Oryza sativa ssp. japonica | chr11 | 2 | CH_osa_38 | 5 | 11 | 0.0000000000116354 |
| Phyllostachys edulis | hic_scaffold_12 | 2 | CH_ped_27 | 6 | 9 | 6.3724e-16 |
| Panicum hallii | Chr03 | 2 | CH_pha_157 | 3 | 3 | 0.000000835799 |
| Sorghum bicolor | Chr05 | 2 | CH_sbi_207 | 3 | 3 | 0.00000289133 |
| Sorghum bicolor | Chr08 | 2 | CH_sbi_232 | 3 | 4 | 0.0000115617 |
| Sorghum bicolor | Chr03 | 2 | CH_sbi_77 | 6 | 35 | 0.000000000167143 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_264 | 4 | 4 | 0.00000000000520279 |
| Setaria italica | scaffold_8 | 2 | CH_sit_192 | 3 | 4 | 0.00000111181 |
| Setaria italica | scaffold_5 | 2 | CH_sit_449 | 3 | 17 | 0.000620797 |
| Setaria italica | scaffold_7 | 2 | CH_sit_96 | 4 | 6 | 0.00000000435438 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_164 | 3 | 3 | 0.000000180867 |
| Spirodela polyrhiza | pseudo6 | 2 | CH_spo_9 | 7 | 7 | 8.83426e-23 |
| Saccharum spontaneum | Chr3A | 2 | CH_ssp_157 | 6 | 65 | 0.0000000156478 |
| Saccharum spontaneum | Chr5A | 2 | CH_ssp_451 | 3 | 3 | 0.00000465879 |
| Saccharum spontaneum | Chr5C | 2 | CH_ssp_452 | 3 | 3 | 0.00000465879 |
| Saccharum spontaneum | Chr7B | 2 | CH_ssp_615 | 3 | 5 | 0.0000465618 |
| Setaria viridis | Chr_08 | 2 | CH_svi_177 | 3 | 3 | 0.000000673859 |
| Setaria viridis | Chr_07 | 2 | CH_svi_203 | 3 | 5 | 0.00000269494 |
| Setaria viridis | Chr_05 | 2 | CH_svi_394 | 3 | 15 | 0.000305934 |
| Triticum aestivum | Chr4A | 2 | CH_tae_776 | 3 | 3 | 0.00000479717 |
| Triticum aestivum | Chr4D | 2 | CH_tae_777 | 3 | 3 | 0.00000479717 |
| Triticum turgidum | chr4A | 2 | CH_ttu_355 | 3 | 3 | 0.00000380949 |
| Zea mays B73 | 3 | 2 | CH_zma_236 | 4 | 73 | 0.00043008 |
| Zostera marina | Chr06 | 2 | CH_zosmarina_40 | 3 | 3 | 0.0000000139858 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |